BAC Information

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BAC

Clone NameMSMg01-406J10
Chromosome5 (Build37)
Map Location 43,572,917 - 43,573,177
singlet/doubletsinglet
Overlap genenone
Upstream geneEG636612, LOC433883, EG665934
Downstream geneCpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406J10.T7 (MSMg01no406_j10.b1)MSMg01-406J10.TJ (MSMg01no406_j10.g1)
ACCAG504748AG504749
length687752
length of high quality
(start - end)
---261 (321 - 581)
definitionCHROMAT_FILE: MSMg01no406_j10.b1 PHD_FILE: MSMg01no406_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:57 2005CHROMAT_FILE: MSMg01no406_j10.g1 PHD_FILE: MSMg01no406_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATTTGCNCNCTAAACNANNCCCAATTTCATAAAAGGGCGNANTTCNN
ANNTTTTTCAAAAAGATGCTGNATGANGNCTTGANTACNTTTTATTAAAT
CAAAATGTCCACCCTGTCNAATAANTGNACAAATTTGACTCNGAATNCAG
AATCNTTCTCCAGNAAAANNNACCTGCTGGCTCCTAGGTGGGGTAGATGG
AGTGNNCTTNNNNNNNNCTNAAAAGGGAAGNATTTTGTTGGGGGGTCTCT
CGAGGGGAGGGGGGGGGGGGGGGGGGGAGGGGGGGAGGGGGGGTGGGAGG
GGGGGGGGGCTNNNNNNNNNNNNNNNNNATTTTCCCNCTTTNNNNTNNTT
NTTTTTTNTTTTTTTGGTGGTNNNNCCTTTNNNNNNNNTTNNNNNNNNNN
NNNNNNNTTTTTNTTNNTTTTTTGGGGGGAGGGAAAAATGATAAAAGAAA
AAAAAAAAAGGGGGGTGGNNNNNNNNNNNNNNNNNNTNTTTTTTTTTAAA
TAATAAATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTTTTTTTNNNNNNTNNNNNNNNTNNNTTNNTTTNNNNT
TTNTNNTNNNTNNNTTTTNNAANTNNNCCNTNNNNNNTNNTTTNNTTTTT
NNTNTTTNTTTTTTTTTTTTTTTTTTATGATGTTGTG
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGAAATACTTACTTCTCTGTTGCAAAGAATGAAATGAT
TCTCACTGGATTGTTGGCCAGAAGCACATCATGTAAACACTTGACAGCAC
TCTGGGCACCATTAAAATAGGACATTCCATTTTGCCTACTTTCCAAGCCT
TGGTACCGTGCAGGAAAAGTCATTCACTTCCTTCAGTGACAGGCAAACAT
TATAGAACCCTGCACTCTGGCATGGCTACAAAGAGTAAAATTCTAGGCAT
TATAGAGAGCATCNTTTTTTCATTTGTTTTAGCAAGCATTGTTTCATTTT
AATAACCTGTGACAAGATGTCTAGCTAACACGAAACACCTGGTAAACACA
TCGGAAATATCGAAATGCGGTTACCACTCGAAAGCTCTCCCAAAACACTT
GGCTATCTACCCTTTCAGTTTACTTGTTTACTTTTAAATTTTGTACATGC
ATACATTGCACATTGAGCCCATCCACCCCGCCCCCATCCTTCCTCTTAGG
CAGCTTTCTCCTCCTAGATGGTTTTACTTCTTGTTTCGTACCACGTGTAC
ATGCTTGCTTTTATGTATCTATTTAAAATTTACGAACCCCAATTGATATA
AAACATATGCTTGTCTTTTGAGAGGCCTGACTTAACTCCCCTAACTATAA
TTATCCCCATTTTTTCTTAATGTCAAGATTCCGACAATGCCTAGTAATGA
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_j10.g1 MSMg01no406_j10.g1 CHROMAT_FILE:
MSMg01no406_j10.g1 PHD_FILE: MSMg01no406_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:57 2005
         (261 letters)



>mm_chr5_43572717_43573377
          Length = 661

 Score =  505 bits (261), Expect = e-147
 Identities = 261/261 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttgttttagcaagcattgtttcattttaataacctgtgacaagatgtctagctaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 catttgttttagcaagcattgtttcattttaataacctgtgacaagatgtctagctaaca 402

                                                                       
Query: 61  cgaaacacctggtaaacacatcggaaatatcgaaatgcggttaccactcgaaagctctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cgaaacacctggtaaacacatcggaaatatcgaaatgcggttaccactcgaaagctctcc 342

                                                                       
Query: 121 caaaacacttggctatctaccctttcagtttacttgtttacttttaaattttgtacatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 caaaacacttggctatctaccctttcagtttacttgtttacttttaaattttgtacatgc 282

                                                                       
Query: 181 atacattgcacattgagcccatccaccccgcccccatccttcctcttaggcagctttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 atacattgcacattgagcccatccaccccgcccccatccttcctcttaggcagctttctc 222

                                
Query: 241 ctcctagatggttttacttct 261
           |||||||||||||||||||||
Sbjct: 221 ctcctagatggttttacttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space:   164304
Effective search space used:   164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)