BAC Information

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BAC

Clone NameMSMg01-406M07
Chromosome5 (Build37)
Map Location 132,636,354 - 132,636,543
singlet/doubletsinglet
Overlap geneAuts2
Upstream geneWbscr17, 4930563F08Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406M07.T7 (MSMg01no406_m07.b1)MSMg01-406M07.TJ (MSMg01no406_m07.g1)
ACCAG504885AG504886
length794811
length of high quality
(start - end)
32 (263 - 294)199 (132 - 330)
definitionCHROMAT_FILE: MSMg01no406_m07.b1 PHD_FILE: MSMg01no406_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:12 2005CHROMAT_FILE: MSMg01no406_m07.g1 PHD_FILE: MSMg01no406_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTATCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGTGACTG
TCCGNGGNAANCAGGNGTTGGCTACACCACGGGGAAGGGNAAANNNCAAC
TTANAGAANNNNGNAAGAGANTTTATNGCACGAANNNNGCNANANNNCNG
NANGNNAAAGGCANAGAATGCCGAAGACCCAGNGACNCGACCNCNAGAAG
AACAGAGAGGGNGNCGGGCCCCCCAAGACCAGACACACAGGCGAACGCCA
GCGTTTTTGTGCGTATTGGGAATTGAACCCAGGTCCTCTGGCTGGACAGC
TATTGCTCTTAACCGATGATTTTTTTTTTAGCCCCAGACACCACCCCAAC
GAGCCAAAGAACAGTACTCACGACACCCTCCGCCGAAAAAAGCACCAATG
CCCACGACCCGCCCCAGAACGCGCCCTGTTGAATATAATCACGCTTTTCC
TTTCTCCTGCTGTCCTTTGATATAATCTGTCTACCCCCAATTATCACCCC
GTTATAATGTTTCTCCACCACTTTACACTATCTCCTTTTGTAAACCCTTT
TCTGTCTTACTTTTTTTAATCTATTAGCAACCACTACTTTATTTTTCTAC
AATTAACTCTCTACTTCTGTACTTCTTATTACCTACTTTTATCTCCCTCC
GCAATCTTCTCTTTTTTTATTTTTTCCGCCAACACCCCTTTTTTGTTTTT
TTTTTCTTTACATTATTCTTTCTCCTCCCCTTCGTCCCTTTCCTCTATAC
TATTCATCTCCCCCACATTCTTAACCTTCATTTTTACTCTCTCT
ACCTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTACCAACAGAATTCTTAAGGCCACGGGGCAC
AGGACTGCTAAGGTGGCTCAAGATATAACGGTGCTTACCTTCTAGCCTGA
TAACATGAGCCTGATGCCGGAACCCACATAGTAGGAAACAAACTAACTTC
TGCAAACAGCTCTTGGACTTCCACATGCAATGCTGTAGTACTTACATGCA
AATGTACACACATGATACACATGCATACACAAGATGGATGGATGATGGAT
GGATTGACGGATGGATGGATGTTTTTTTTTTTCACACAAAACCCCCCCCA
CATACCCTTTCTCTTTTTTTTTTTTTTCTCTTACTTTTTTTCCCCCTCTT
CTTTCTTCCCTTCCTTTTATTCACCTTTCCTCACTTTTATTTTTCTCCTC
CCCTCCTTTCTTTTATCCTCTTTTTCTTTCTCATCCTCTATCTTTTCCCA
TCATTTACCACCATAAAGGACCTAGTTTTATTTTTCGTGCTTTTTTTTTC
CTGCGCTCCCTTTTCTTTTCATACTTTATCACATTTCTTCTCCCTCCTTA
CCTCTTCTCCCCTCACACACTACTCACACCCCTTTCTATCTTTCCATTAT
TACCTCTCCCCTTTTTTCTCCCCTTGCTTCACTTTCCCCCACTCTATATC
ACCACTCTCTTCACTCTTTCTTTCTTTATCTAATTATTTCTACCCTTACT
TCCTACCATATTCTCCATCTCTTTTTGCATATTATTTAATAATCTACTTA
ACTTCTATCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_m07.g1 MSMg01no406_m07.g1 CHROMAT_FILE:
MSMg01no406_m07.g1 PHD_FILE: MSMg01no406_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:12 2005
         (199 letters)



>mm_chr5_132636154_132636752
          Length = 599

 Score =  352 bits (182), Expect = e-102
 Identities = 188/190 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcttaccttctagcctgataacatgagcctgatgccggaacccacatagtaggaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcttaccttctagcctgataacatgagcctgatgccggaacccacatagtaggaaacaa 260

                                                                       
Query: 61  actaacttctgcaaacagctcttggacttccacatgcaatgctgtagtacttacatgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaacttctgcaaacagctcttggacttccacatgcaatgctgtagtacttacatgcaa 320

                                                                       
Query: 121 atgtacacacatgatacacatgcatacacaagatggatggatgatggatggattgacgga 180
           |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 atgtgcacacatgatacacatgcatacacacgatggatggatgatggatggattgacgga 380

                     
Query: 181 tggatggatg 190
           ||||||||||
Sbjct: 381 tggatggatg 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)