Query= MSMg01no406_m22.b1 MSMg01no406_m22.b1 CHROMAT_FILE:
MSMg01no406_m22.b1 PHD_FILE: MSMg01no406_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:15 2005
(446 letters)
>mm_chr5_34932246_34933086
Length = 841
Score = 779 bits (403), Expect = 0.0
Identities = 434/447 (97%), Gaps = 7/447 (1%)
Strand = Plus / Minus
Query: 1 acttgattagaattcagggcaccacaaaagggtggaggtcgaagttccaaaagctctgag 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 559 acttgattagaattcagggcaccaaaaaagggtggaggtcgaagttccaaaagctctgag 500
Query: 61 cctctgagacctaccttaattcttcctctacccactcacttataactccttcccttcacc 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 499 cctctgagacctaccttaattcctcctctacccactcacttataactccttcccttcacc 440
Query: 121 ctcacacacctcatcacctcacacaacctcctagcagcacctgaccacccccaccccttt 180
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctc-----cgtgatcacctcacacaacctcctagcagcacctgaccacccccaccccttt 385
Query: 181 cacccccaacccccca-cctcccagcgtcctttctgccttccctcctatctctccagcca 239
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacccccaa-cccccagcctcccagcgtcctttctgccttccctcctatctctccagcca 326
Query: 240 ctctgtgtagcttcccttgctgcctcctttcttcccagagccctgagctcttgctcttcc 299
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctgtgcagcttcccttgctgtctcctttcttcccagagccctgagctcttgctcttcc 266
Query: 300 ctaacaatactgtcagccccatctctatttgtactctctggttctctattctggccatct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaacaatactgtcagccccatctctatttgtactctctggttctctattctggccatct 206
Query: 360 atcaaattcacctagagaagccaggcattgtggtgcatgtctgttatcccagtactctga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 atcaaattcacctagagaagccaggcattgtggtgcatgtctgttatcccagtactctga 146
Query: 420 aggctgaggcaggaggatcactgattc 446
|||||||||||||||||||||||||||
Sbjct: 145 aggctgaggcaggaggatcactgattc 119
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 841
Length adjustment: 10
Effective length of query: 436
Effective length of database: 831
Effective search space: 362316
Effective search space used: 362316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_m22.g1 MSMg01no406_m22.g1 CHROMAT_FILE:
MSMg01no406_m22.g1 PHD_FILE: MSMg01no406_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:15 2005
(480 letters)
>mm_chr5_34755439_34756318
Length = 880
Score = 897 bits (464), Expect = 0.0
Identities = 476/480 (99%)
Strand = Plus / Plus
Query: 1 ctggagaactgctgactttccgttagtgctggaatcctgaaaaaattggttcaattactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggagaactgctgactttccgttagtgctggaatcctgaaaaaattggttcaattactg 260
Query: 61 gtataggaacagatcacttaaaatctcttattctctatgtatttttgtccttttcttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtataggaacagatcacttaaaatctcttattctctatgtatttttgtccttttcttttt 320
Query: 121 tttaaaaaaaatcaatgtttccagttttgtttacatggtttcaggatgtatactgactga 180
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaaaaaaaatcaatgtttccagttttgtttacatggtttcaggatgtatactgactga 380
Query: 181 gacattgagagtacaggcaagatatttaaggtaggtcttcctacttccagtaatctaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacattgagagtacaggcaagatatttaaggtaggtcttcctacttccagtaatctaatt 440
Query: 241 aataaagttcctcataggaatgcccagcagtttttgttttagttggttcgagatgcagtc 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaaagttcctcataggaatgcccagcagtttttgttttagttggttcgagatgcagtc 500
Query: 301 aagttgacaatcatgaataactagcacactccaggtagcatttcttctgtagccactcat 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 aagttgacaatcatgaataactagcacactccagatagcatttcttctgtagccactcat 560
Query: 361 ttccagcctcattcatgttttgtgtatattgagcccagaaagctaaaagacatatgtatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttccagcctcattcatgttttgtgtatattgagcccagaaagctaaaagacatatgtatg 620
Query: 421 tatgtacatacgtacgtacttacttacttagacagcatttttctttgtagttctagctgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatgtacatacgtacgtacttacttacttagacagcatttttctttgtagttctagctgt 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
