Query= MSMg01no406_m24.b1 MSMg01no406_m24.b1 CHROMAT_FILE:
MSMg01no406_m24.b1 PHD_FILE: MSMg01no406_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:15 2005
(496 letters)
>mm_chr5_82787847_82788742
Length = 896
Score = 901 bits (466), Expect = 0.0
Identities = 487/494 (98%)
Strand = Plus / Minus
Query: 2 atataaatcaattctaatttaatcagaatctccagtttgataattcatatttgatcttaa 61
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 695 atataaatcaattctaatttaatcagaatctccagtttgataatacaaatttgatcttaa 636
Query: 62 aagagaaaagagaatgaaaaagcatttaacattgcaggcatagaaaattattttcagaat 121
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 635 aagagaaaagagaatgaaaaagcatttaacattgcaggcatagaaaatgattttcagaat 576
Query: 122 aggactcaagtaggcaaagaaatgatcagatggattgacaaacagcataaagtagagtca 181
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aggactcaagtagccaaagaaatgatcagatggattgacaaacagcataaagtagagtca 516
Query: 182 acaccttccacacagcagaggaaacagaccccacagtgagagacattctgtagacatttc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 acaccttccacacagcagaggaaacagaccccacagtgagagacattctgtagacatttc 456
Query: 242 tgaggcaaatttattttacttaatggttccaatggttttcctggaaatggtatgattttg 301
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 455 tgaggcaaacttattttacttaatggttccaatggttttcctggaaatggtgtgattttg 396
Query: 302 ttttatttaatgacagagcaactatgttgtctatacatttcatatttagaagaactatcc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttttatttaatgacagagcaactatgttgtctatacatttcatatttagaagaactatcc 336
Query: 362 agcttaatacacacctacactaattccataaagtagcatttgtaaacagagctgcagcaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 335 agcttaatacacacctacactaattccataaagtagcatttgtaaacagagttgcagcaa 276
Query: 422 gtatttgagggtgaggatctcctcattcatctactgagatgtgacacagctagaatataa 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gtatttgagggtgaggatctcctcattcatctactgagatgtgacacagctagaatataa 216
Query: 482 agaaaatctttctt 495
||||||||||||||
Sbjct: 215 agaaaatctttctt 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_m24.g1 MSMg01no406_m24.g1 CHROMAT_FILE:
MSMg01no406_m24.g1 PHD_FILE: MSMg01no406_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:15 2005
(438 letters)
>mm_chr5_82608375_82609212
Length = 838
Score = 735 bits (380), Expect = 0.0
Identities = 421/438 (96%), Gaps = 8/438 (1%)
Strand = Plus / Plus
Query: 1 ttggtgtcccattaccaattttgaaaaaaaatatgtatatttatgtgtatgtgcatgttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ttggtgtcccattaccaattttgaaaaaaaatatgtatatttatgtgtatgtgcatgttc 268
Query: 61 atatatatgtttaatatatatatatacacacacacacatatatatgtacatatatatgta 120
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 269 atatatatgttta--atatatatatacacacacacacatatatatgtatatatatatgta 326
Query: 121 tatacacacacacacacacacatatatatatatgtatatatgtatatatatatataattt 180
|| ||||||||||||||||||| | ||||| |||||| ||||||||||||||||||
Sbjct: 327 tacacacacacacacacacacacacatata----tatata--tatatatatatataattt 380
Query: 181 tatgtgcacttatgatgatgcattttggccaaatcacttcccttccctgccctccagttt 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tatgtgcacttatgatgatgcattttggccaaatcacttccctttcctgccctccagttt 440
Query: 241 ctctcttatcttgcccaactttaagctttcccaagtttatgtgctttctatttttatttt 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctcttgtcttgcccaactttaagctttcccaagtttatgtgctttctatttttatttt 500
Query: 301 aaactcactgagtgcacttagtgtccatgcatacatgtttgatttcttgagaaataattt 360
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 501 aaactcactgagtgcacttagtgcccatgcctacatgtttgatttcttgagaaataattt 560
Query: 361 aaaggtggatgtctatgaaggaggaaaagatctggaaagatacagaagaggaaaaagata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 aaaggtggatgtctatgaaggaggaaaagatctggaaagatacagaagaggaaaatgata 620
Query: 421 taaccaaaatatacttaa 438
||||||||||||||||||
Sbjct: 621 taaccaaaatatacttaa 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
