Query= MSMg01no406_p22.b1 MSMg01no406_p22.b1 CHROMAT_FILE:
MSMg01no406_p22.b1 PHD_FILE: MSMg01no406_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:30 2005
(444 letters)
>mm_chr5_90148716_90149558
Length = 843
Score = 725 bits (375), Expect = 0.0
Identities = 427/445 (95%), Gaps = 3/445 (0%)
Strand = Plus / Minus
Query: 1 gatgcacagaggtggaaacatgacaatgggaagaaagaggaaatcatggaaatgtaattt 60
||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct: 643 gatgcacagaggtggaaacatgagaatgggaagaaagagaaaaccatggaaatgtaattt 584
Query: 61 acagcaaatatattctctgcccctatattgttaggaccaatggttttaaattctagagat 120
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 acagcaaatgtattgtctgcccctatattgttaggaccaatggttttaaattctagagat 524
Query: 121 tgtaagcacactaattctattatgttaattacatacagagaaaaat-tagcaattattat 179
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 523 tgtaagcacactaattctattatgttaattacacacagagaaaaaaatagcaattattat 464
Query: 180 tagttcagttggaaatattttgtgaatgcattcaagttacaaaagataaacaaataactc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tagttcagttggaaatattttgtgaatgcattcaagttacaaaagataaacaaataactc 404
Query: 240 acagtaattaaagtgtgtttttaaaaagagatcccaaagctagtgtgtgattcatgatgt 299
|||||||||||||||||||||| |||||||||||||||| || |||||||||||||| ||
Sbjct: 403 acagtaattaaagtgtgttttttaaaagagatcccaaagttaatgtgtgattcatgacgt 344
Query: 300 ttagtacaaacatgcacactgttataatgaggaagtcttccctaatctctcagagggtgc 359
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 343 ttagtacaaacatgcaca--gttataatgaggaaatcttccctaatctctcagagggtgc 286
Query: 360 tgctgtagagtctgctattgtgagttgagggaaagtgtgacttgttttaaaataaattga 419
||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 285 tgctgtagagtatgctattgtgagttgagggaaattgtgacttgttttaaaatagattga 226
Query: 420 aaaagttgagagatgcatatctggg 444
|||||||||||||||||||||||||
Sbjct: 225 aaaagttgagagatgcatatctggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 843
Length adjustment: 10
Effective length of query: 434
Effective length of database: 833
Effective search space: 361522
Effective search space used: 361522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_p22.g1 MSMg01no406_p22.g1 CHROMAT_FILE:
MSMg01no406_p22.g1 PHD_FILE: MSMg01no406_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:31 2005
(496 letters)
>mm_chr5_89955165_89956055
Length = 891
Score = 901 bits (466), Expect = 0.0
Identities = 487/496 (98%), Gaps = 5/496 (1%)
Strand = Plus / Plus
Query: 1 cctatggcttctcatagctgttagtgtcttacccggaccagactcgcatccttgatcccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctatggcttctcatagctgttagtgtcttacccggaccagactcgcatccttgatcccc 260
Query: 61 ttgatccccttgatcgtacccctgccactccttgaaagagtctttaactttttcattcac 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgatccccttgatcgtacccttgccactccttgaaagagtctttaactttttcattcac 320
Query: 121 cctgtgaatctctgaattaatacatcctattttaagcgtgacttctcttagccatttgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 cctgtgaatctctgaattaatacatcctattttaagcgtgacttctcttagtcatttgca 380
Query: 181 acttccgaagaaattgtgttagtgtcaccgcagggctctccttgtctctccctattggtg 240
||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 381 acttc-gaagaaattgtgttagcgtcaccgcagggctctccttgtc----cctattggtg 435
Query: 241 gctatgagaatccacacttccagaacctcagtgaggtctttcaagctacgaggacaaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gctatgagaatccacacttccagaacctcagtgaggtctttcaagctacgaggacaaaga 495
Query: 301 gagcagtggaggtgaggattcacttgtaatctaaaatggaattctcgctgttatgagaac 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 496 gagcagtggaggtgaggattcatttgtaatctaaaatggaattctcgctgttatgagaac 555
Query: 361 ttaacaaaaatcaacgaatgattaatatgtaccacgaccattctggcatacttaagggtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ttaacaaaaatcaacgaatgattaatatgtaccacgaccattctggcatacttaagggtg 615
Query: 421 gctatccgtttagttcttaaagaacctactaagattatcaccagttgtctttttgcagca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gctatccgtttagttcttaaagaacctactaagattatcaccagttgtctttttgcagca 675
Query: 481 aaaagaaacagacacc 496
||||||||||||||||
Sbjct: 676 aaaagaaacagacacc 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 891
Length adjustment: 10
Effective length of query: 486
Effective length of database: 881
Effective search space: 428166
Effective search space used: 428166
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
