BAC Information

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BAC

Clone NameMSMg01-407E03
Chromosome5 (Build37)
Map Location 101,630,618 - 101,631,155
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik
Downstream geneLOC100041888, LOC100040902, Cycs-ps2, LOC100040920, Nkx6-1, Cds1, Wdfy3, EG666515, EG666527
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407E03.T7 (MSMg01no407_e03.b1)MSMg01-407E03.TJ (MSMg01no407_e03.g1)
ACCAG505259AG505260
length749750
length of high quality
(start - end)
564 (43 - 606)541 (74 - 614)
definitionCHROMAT_FILE: MSMg01no407_e03.b1 PHD_FILE: MSMg01no407_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:51 2005CHROMAT_FILE: MSMg01no407_e03.g1 PHD_FILE: MSMg01no407_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTACATCTTCATATGAAGGCTGCTTAGAGAATATAAGCTTCCAGGCAGC
TAGGGTGAGAGTCTTAAAGCCCACACCCACAGTGACACACTTACTACAAC
AGGGCCACATCTTTTAATAGTACCACTTCCTGGGCCAAGCATATACAAAC
CATCACATTTCACACCCTGGCCCTCATAAGCTTGTTCAAACACATGTCTA
ATTTCCAAAGTCCCCATAGTCTAATACAGTGTTAAAAGTCCAAAGTTCAG
AGTCTTCACTGAGATTTATTTAATAACTTAACTGTAATCCCCAAATCAAG
ACAGGGAAACAGCTGGGCAAATTCCAAACTCTGCATCTCCATGTCTGATG
TCAAAGCAGTCTTCAGATTTCCAACTCCTTTTTCAACATTGTTGATGGCA
ACAAACTTCTTTCTTCTGGGCTGGTTCCACTGCCTGTTAACAACTTTCCT
CAACAGATATGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAAC
TCAACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGT
ATACCCAAGATATAAGACACCATTTCCTAAACACATGAGACTCAAGAATA
ATGAATACTGAAGTGTGGACATTATGCCCCTCCTTAGAAGTGGGAACAAA
TCTCCCTTGGAAAGAGTTACAGAGACAATATTTGGAACTGACAACGAAC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAACTTAGAGCTTTTGCTCCATGGAG
CTGTAGAAATGCACCTTAACCCAGTGCTACCTTGGGTCTTGGAGTTTCTC
CGGCAGTTGTCAACTTTGCAGGGCAGTTGTCAATTTTGCAGGGCTCTCAT
TCCTCTTCCTGGTGCCTCAGACTTTGGGGAGAATATGGGTCTGTCCTGAG
CCTTGAAAAGAGATCCTATGGCTTTCTAAGAAGATGAACTGGTCACCAGA
ATAGCCTTGACAAACATGGTTTTGCCTTCTGCGTGCCTGTGACTTTACTG
GTTGTTAACCACACCAGAGAGTAAGAGAAAAGATTTGGGAGGAAGAAAAG
CGAGTGTGGAGGAGGATCAAAGCCAAGTGTGAAAGCCTGGACAGTGTGAA
CATTGTTCTAATATTAACAAAATGATGGTTCACCTTCATGGGTCAATCAA
GCATGGAACACATGACTGAAGACTAACCCTGAGTCCAAACTGGTACTGAG
AGAGATCAATTCAAACAATGTTAATTGTATTAAACTGACAGGAAATTGCA
GAAATATTTGATTTACCAGTGACTTAGACTTAAAAAATATCTTTCAGATG
ATTCAGACTGATCCCTTCTTTTCCAGATGGGAAAATGTGATTCACAAAAT
AAAGGACTTGTTCTAGGTCCCAACGAAAGAACTGCATTCTTACCCTTCCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_e03.g1 MSMg01no407_e03.g1 CHROMAT_FILE:
MSMg01no407_e03.g1 PHD_FILE: MSMg01no407_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:51 2005
         (541 letters)



>mm_chr5_101630418_101631358
          Length = 941

 Score =  994 bits (514), Expect = 0.0
 Identities = 532/538 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaacttagagcttttgctccatggagctgtagaaatgcaccttaacccagtgctacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 aaaacttagagcttttgctccatggagctgtagaaatgcaccttagcccagtgctacctt 260

                                                                       
Query: 61  gggtcttggagtttctccggcagttgtcaactttgcagggcagttgtcaattttgcaggg 120
           ||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gggccttggagtttctccagcagttgtcaactttgcagggcagttgtcaactttgcaggg 320

                                                                       
Query: 121 ctctcattcctcttcctggtgcctcagactttggggagaatatgggtctgtcctgagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctcattcctcttcctggtgcctcagactttggggagaatatgggtctgtcctgagcct 380

                                                                       
Query: 181 tgaaaagagatcctatggctttctaagaagatgaactggtcaccagaatagccttgacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaaagagatcctatggctttctaagaagatgaactggtcaccagaatagccttgacaa 440

                                                                       
Query: 241 acatggttttgccttctgcgtgcctgtgactttactggttgttaaccacaccagagagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatggttttgccttctgcgtgcctgtgactttactggttgttaaccacaccagagagta 500

                                                                       
Query: 301 agagaaaagatttgggaggaagaaaagcgagtgtggaggaggatcaaagccaagtgtgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagaaaagatttgggaggaagaaaagcgagtgtggaggaggatcaaagccaagtgtgaa 560

                                                                       
Query: 361 agcctggacagtgtgaacattgttctaatattaacaaaatgatggttcaccttcatgggt 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 agcctggacagtgtgaacattgttctaatatttacaaaatgatggttcaccttcatgggt 620

                                                                       
Query: 421 caatcaagcatggaacacatgactgaagactaaccctgagtccaaactggtactgagaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caatcaagcatggaacacatgactgaagactaaccctgagtccaaactggtactgagaga 680

                                                                     
Query: 481 gatcaattcaaacaatgttaattgtattaaactgacaggaaattgcagaaatatttga 538
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 gatcaattcaaacaatgttaattgtattaaactaacaggaaattgcagaaatatttga 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)