Query= MSMg01no407_l11.b1 MSMg01no407_l11.b1 CHROMAT_FILE:
MSMg01no407_l11.b1 PHD_FILE: MSMg01no407_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:26 2005
(561 letters)
>mm_chr5_149427122_149428081
Length = 960
Score = 980 bits (507), Expect = 0.0
Identities = 547/565 (96%), Gaps = 9/565 (1%)
Strand = Plus / Minus
Query: 1 ttaagtccatctgccctcagatgctgcagtgcagaggggaatctggcctttacagactcc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 760 ttaagtccatctgccctcagatgctgcagtgcagaggggaatctggccttcccagactcc 701
Query: 61 tcctccacaccggatgagagaagctggccatctggtgtggaaccaagccagatggggcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tcctccacaccggatgagagaagctggccatctggtgtggaaccaagccagatggggcag 641
Query: 121 gttgctgaggggaggctctgagaggcaccacagagacgggggtgactttgagttcctgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gttgctgaggggaggctctgagaggcaccacagagacgggggtgactttgagttcctgat 581
Query: 181 cacagcagcccccaccgctcatgggacggcattgttcactgcagcgcaaggggaactcgt 240
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 580 cacagcagcccccaccgctcatgggaccgcattgttcactgcagcgcaaggggaacacgt 521
Query: 241 tggttctgctcctgattggagtctgtgttgtgcttttaactgcttcgcctctgaatgcca 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tggttctgctcctgattggattctgtgttgtgcttttaactgcttcgcctctgaatgcca 461
Query: 301 ggccagctgtttaaatacatgcttgtggccagctttcctctgcgggagcccctcgttgtt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 460 ggccagctgtttaaatacatgcttgtggccagctttcctctgcgggagcccctcattgtt 401
Query: 361 ctgaatgtaaaaataggagaccccgcttcacagtgaggctcagaaaaccctggtcatggg 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 400 ctgaatgtaaaaataggagaccccgcttcacagtgaggctcagaaacccctggtcatggg 341
Query: 421 tccctacacagtattatgttactttggttagacctaaataaaagacttga----taaaaa 476
|||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 340 tccctacacagtattatgttactttggttagacctaaataaaagacttgattttt----- 286
Query: 477 aaaaaaaaagagtatttttctgcatgttaaaagtgcatggataaagcccattagtcctga 536
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 285 aaaaaaatagagtatttttctgcatgttaaaagtgcatggataaagcccatcagtcctga 226
Query: 537 agaatatacttgatcatgataaacc 561
|||||||||||||||||||||||||
Sbjct: 225 agaatatacttgatcatgataaacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 960
Length adjustment: 10
Effective length of query: 551
Effective length of database: 950
Effective search space: 523450
Effective search space used: 523450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_l11.g1 MSMg01no407_l11.g1 CHROMAT_FILE:
MSMg01no407_l11.g1 PHD_FILE: MSMg01no407_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:26 2005
(483 letters)
>mm_chr5_149238154_149239036
Length = 883
Score = 853 bits (441), Expect = 0.0
Identities = 475/491 (96%), Gaps = 8/491 (1%)
Strand = Plus / Plus
Query: 1 acatctagagattcttagaggactccatccttgactgtggaccatcggatgaggggcaat 60
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 acatctagagatccttagaggactccatccttgactgtggaccatgggatgaggggcaat 260
Query: 61 catggtttccctggtaattacggaggagaaccaaccaatgaggggccagctgggaggcgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 catggtttccctggtaattacggaggagaaccaaccaatgaggggccagctgggaggtgt 320
Query: 121 gaaccaggaactttgatatgaccaatctttagaaatgaaagagatgtctttatttttatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaccaggaactttgatatgaccaatctttagaaatgaaagagatgtctttatttttatg 380
Query: 181 tatgtgtaaagtttttttccttgcatgtatctgtgcatcatgcatatgtagttactggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgtgtaaagtttttttccttgcatgtatctgtgcatcatgcatatgtagttactggag 440
Query: 241 aggtcgaaagaaggcatcagattctctggaattggagtggtggacagttattagctacca 300
||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 aggccgaaagaaggcatcggattctctggaattggagtggtggacagttattcgctacca 500
Query: 301 tacggtgctgggaactgaacactggtcctctgtaagagcaacaagtgctcttaaccacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacggtgctgggaactgaacactggtcctctgtaagagcaacaagtgctcttaaccacca 560
Query: 361 agtcatctttctaggcccattgtgatctatctatctgtctgtct--------atctatct 412
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 agccatctttctaggcccattgtgatctatctatctgtctgtctgtctgtctatctatct 620
Query: 413 atctgtctgtctgtctgtctgtcgtctgtctgtctatcatttacctacctacctagctac 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtctgtctgtctgtctgtctgtcgtctgtctgtctatcatttacctacctacctagctac 680
Query: 473 ttgtttttggt 483
|||||||||||
Sbjct: 681 ttgtttttggt 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
