Query= MSMg01no407_n06.b1 MSMg01no407_n06.b1 CHROMAT_FILE:
MSMg01no407_n06.b1 PHD_FILE: MSMg01no407_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:35 2005
(554 letters)
>mm_chr5_115256246_115257199
Length = 954
Score = 640 bits (331), Expect = 0.0
Identities = 376/412 (91%), Gaps = 33/412 (8%)
Strand = Plus / Minus
Query: 176 aaataagttgccaggcctggtggtgcacaccgttaatcctagggctcctaaggcagaagt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 aaataagttgccaggcctggtggtgcacaccgttaatcctagggctcctaaggcagaagt 891
Query: 236 cggtgagtctctgaagagttcctggccaaccagggctacagacagctttactaaagggaa 295
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 890 cggtgagtctctgaagagttcctggccaaccaaggctacatacagctttactaaagggaa 831
Query: 296 ctcaggggtgcaaggcaaggccccttagtcaaaccatcccccacacattacctgtgtagc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ctcaggggtgcaaggcaaggccccttagtcaaaccatcccccacacattacctgtgtagc 771
Query: 356 cagtgga---------------ac------------------acgtgaccagcctacacc 382
||||||| || ||||||||||||||||||
Sbjct: 770 cagtggaatacgtgaccacattacctgtgtagccagtggaatacgtgaccagcctacacc 711
Query: 383 acacatggggcactgtttgaggtctggggactgggagccccagtcatttcccagctgcac 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 acacatggggcactgtttgaggtctggggactgggagccccagtcatttcccagctgcac 651
Query: 443 tganagcccaaacccacacctatttctagactgaggtctgggtagcacaccttggtctcc 502
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tgaaagcccaaacccacacctatttctagactgaggtctgggtagcacaccttggtctcc 591
Query: 503 aggactgtcccacagtcacctagtttctatagtccggtccatctctccatgt 554
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aggactgtcccacagtcacctagtttctatagtccggtccatctctccatgt 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_n06.g1 MSMg01no407_n06.g1 CHROMAT_FILE:
MSMg01no407_n06.g1 PHD_FILE: MSMg01no407_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:35 2005
(486 letters)
>mm_chr5_115070556_115071439
Length = 884
Score = 882 bits (456), Expect = 0.0
Identities = 478/488 (97%), Gaps = 6/488 (1%)
Strand = Plus / Plus
Query: 1 tctgcatcagtgccctgatttgagatttcctgacatctgggatgatggacactaagtctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcatcagtgccctgatttgagatttcctgacatctgggatgatggacactaagtctt 260
Query: 61 ttgtggacggtctatctgaaccacatgaatgtatatggccactacagccatggttctgtc 120
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtggacggtctatctgaaccacgtgaatgtatatggccactacagccatggttct--- 317
Query: 121 tctttggggaatcccgaggagttactgtatttcatttcctttagtggccagattatattc 180
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 -ctttggggaatcctgaggtgttactgtatttcatttcctttagtggccagattatattc 376
Query: 181 catcatacagacatacctctttatctgttcagccctaagccagggaaacggaggccttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 catcatacagacatacctctttatctgttcagccctaagccagggaaacggaggccttga 436
Query: 241 ccatgccccaaggact--gaaaattctggaggcaaggctagagcccagttctctgccttc 298
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ccatgccccaaggactctgaaaattctggaggcaaggctagagcccagttctctgccttc 496
Query: 299 tggaactttctcccacatattcttcactgttccaaatcggggtgggggcacccaagatgg 358
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 497 tggaactttctcccacatattcttcactgttccaaatcggggtgagggcacccaagatgg 556
Query: 359 acagggcccctccctgtgtctccagcacccaccttcagggaatagccaggggccaccttg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acagggcccctccctgtgtctccagcacccaccttcagggaatagccaggggccaccttg 616
Query: 419 tcttctggtcacccaaagagagagcccagagcctggcttaagtacgcaggtgtttccacg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tcttctggtcacccaaagagagagcccagagcctggcttaagtacgcaggtgtttccacg 676
Query: 479 tcagccag 486
||||||||
Sbjct: 677 tcagccag 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 884
Length adjustment: 10
Effective length of query: 476
Effective length of database: 874
Effective search space: 416024
Effective search space used: 416024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
