BAC Information

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BAC

Clone NameMSMg01-408L06
Chromosome5 (Build37)
Map Location 39,816,988 - 39,817,406
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk, LOC384174
Downstream geneHs3st1, EG665839, LOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408L06.T7 (MSMg01no408_l06.b1)MSMg01-408L06.TJ (MSMg01no408_l06.g1)
ACCAG506360AG506361
length791775
length of high quality
(start - end)
440 (45 - 484)419 (73 - 491)
definitionCHROMAT_FILE: MSMg01no408_l06.b1 PHD_FILE: MSMg01no408_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:46 2005CHROMAT_FILE: MSMg01no408_l06.g1 PHD_FILE: MSMg01no408_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCACTATTCACTTGCATGTATTGGATTACCTTACATTTATGGTTG
AGCTCACTTTGTCATGACTCTATAGAGAGAAATGCACCGGAAAAAAAATT
TATGGTGGCTAGTGGCTTCTTGTCACTTCAGGGGATGCAGGCTGATTGAC
AGAGTGATGTCAGCTGATACAGACTCACATAGTTTTACTAAGACAGACTC
ACATGCTGAGACAAGTGGTAAGGCAAGACCCATGGAGGATACATGATGTT
TGGAGAGAGTTAAATAGGACTCTTCTGACTGAGAGGAGCTTGCATGTAGA
GCTAGCTCTGCAATGATTCTTGGTCTCCAGTCTTTGTTGATCTCCATTTC
AATGAGAGATGCACTACAAAGAATTTCTCCTGACATCCCTGCTGGTCCTA
TTCCTCCTGCTGACTTGAGCTGATTCTGCTGAGGCCAGGCTGTTCCTGTC
TGGTCTTGCTACCATTGCTGTTATCCTGTCCCTACCTAAATGAACTGTTG
ATTTTCCGACAACTCTATTGGGATTTTGCCCCTTTGAACAAATTTTCTAA
ATTGGGCCTCCCTTTCATCATATTCTCAATACGAATTATCCCTCGTCCCT
CCTATCCCCTCCTTGCACTCTTCGCCTTCCTCACTTTTATCCTTATCTTT
ATCTACTTATCCCATATCCTTACTATCCTTTCTCCCTCTCTCCCANAATT
GTTTCCTCTTCTTTTTTTTTTCCCCCTCTCTTTTCTCTTCG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCTTGCAGTGCTATGGAGCTGAGATTT
TTACATCAGAGGCTCTGCATGACTCTTTACACGTGATGCGCCAGCTTGGC
TCTGAACCCATGGAAGCCATTTAAGAGGAAGGCAGTCACAACCTTAACAG
TATGGAAGGAAACCTATTCTTCTCCCCAGGATAAGAGAACACAGCTCCAT
TCTCTCCCGTCCCTCAGCTCTCCCAGCTCCTTCCTGGTCAGATGAAGAAC
AGAAAACAGGACAGGGACAGGGGAGTATCATGGAAATGGGATCCTAGAGC
ATTTCTCAGTTTTCTTGAATCTTCCAGACCAATGAGGTCTGCGCTCTGGT
TTTTAAAGGGTAACACTGTACATTGGGAAAACAAGAGACGTCAATTCGAA
AGCTGAGCAAAAGCTGTGAACGCGTGCGATATGACTTGAAAGAGCACAAG
CTATTTGGAGTTGTTCAGCGTGTATGCCTCACTTCACACATTGCGGTGAG
TTCCAGCTGAAAATCCAGACCGTTTCAGTTAGTAATGTTAACTGTCCTAA
TCTTACTTTTTTATCCCCTATGCTTTTTTCTTTTATTTCTTCTCCTTACG
GGTTTCTTCCCGATCTCCTCTCTTCATCCTTTATTTATTTTTTCGTTTTA
ACCCTTATCCCTTCCACCTTTTCGCCTATCCTTATTTTCAACCCTTCCTC
TCCTCAGTCTATCCCCTGTTTTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_l06.g1 MSMg01no408_l06.g1 CHROMAT_FILE:
MSMg01no408_l06.g1 PHD_FILE: MSMg01no408_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:46 2005
         (419 letters)



>mm_chr5_39816788_39817606
          Length = 819

 Score =  756 bits (391), Expect = 0.0
 Identities = 412/419 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcttgcagtgctatggagctgagatttttacatcagaggctctgcatgactctttacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctcttgcagtgctatggagctgagatttttacatcagaggctctgcatgactctttacac 560

                                                                       
Query: 61  gtgatgcgccagcttggctctgaacccatggaagccatttaagaggaaggcagtcacaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtgatgcgccagcttggctctgaacccatggaagccatttaagaggaaggcagtcacaac 500

                                                                       
Query: 121 cttaacagtatggaaggaaacctattcttctccccaggataagagaacacagctccattc 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 499 cttaacagtatggaaggaaacctattcttctccccaggataagagagcacagctccattc 440

                                                                       
Query: 181 tctcccgtccctcagctctcccagctccttcctggtcagatgaagaacagaaaacaggac 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tctcccatccctcagctctcccagctccttcctggtcagatgaagaacagaaaacaggac 380

                                                                       
Query: 241 agggacaggggagtatcatggaaatgggatcctagagcatttctcagttttcttgaatct 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agggacaggagagtatcatggaaatgggatcctagagcatttctcagttttcttgaatct 320

                                                                       
Query: 301 tccagaccaatgaggtctgcgctctggtttttaaagggtaacactgtacattgggaaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tccagaccaatgaggtctgcgctctggtttttaaagggtaacactgtacattgggaaaac 260

                                                                      
Query: 361 aagagacgtcaattcgaaagctgagcaaaagctgtgaacgcgtgcgatatgacttgaaa 419
           |||||||| ||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 259 aagagacggcaatttgaaagctgagcaaaagctgtgaacgcgtgtgaaatgacttgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)