Query= MSMg01no408_l15.b1 MSMg01no408_l15.b1 CHROMAT_FILE:
MSMg01no408_l15.b1 PHD_FILE: MSMg01no408_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:48 2005
(455 letters)
>mm_chr5_77705090_77705941
Length = 852
Score = 727 bits (376), Expect = 0.0
Identities = 414/432 (95%), Gaps = 10/432 (2%)
Strand = Plus / Minus
Query: 24 ggactatacagagaaaccctgtctcgaaaaa-------aaacaaaaactcaaaaagagaa 76
||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 691 ggactatacagagaaaccctgtctcgaaaaaaacaaacaaacaaaaactcaaaaagagaa 632
Query: 77 cagctaaggcctctgaagtgctgagccatctatccagccccccaaatctgtcttttatgt 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cagctaaggcctctgaagtgctgagccatctatccagccccccaaatctgtcttttatgt 572
Query: 137 ccatatgtgtcctgagaacagagactcctgggagcagtgactgcgactatttcagccacg 196
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 571 ccatatgtgtcctgagaacagagactcctgggagcagtgactgtgactatttcagccacg 512
Query: 197 caatagccctgcatgactttattgtaaatcagtgaattggattgtccattattttcttta 256
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 511 gaatagccctgcatgactttattgtaaatcagtgaattggactgtccattcttttcttta 452
Query: 257 cgtttattttgtatgctgatccccttagcaccaccactgaactgggtgagagttcatgcc 316
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 451 cgtttattttgtatgctgatccccttag---caccactgaactgggtgagagttcatgcc 395
Query: 317 tagccccagcatctaggaggtgaaggcagggggtcgagaatttaaaggcatctttagcta 376
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 394 cagccccagcacctaggaggtgaaggcagggggtcgaaaatttaaaggcatctttagcta 335
Query: 377 tgtactgaaataagagaatcaaaagtttaaagtcatcttcaaccagggctacatgagacc 436
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtactgaaataggagaatcaaaagtttaaagtcatcttcaaccagggctacatgagacc 275
Query: 437 accttgaaaaga 448
||||||||||||
Sbjct: 274 accttgaaaaga 263
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 852
Length adjustment: 10
Effective length of query: 445
Effective length of database: 842
Effective search space: 374690
Effective search space used: 374690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_l15.g1 MSMg01no408_l15.g1 CHROMAT_FILE:
MSMg01no408_l15.g1 PHD_FILE: MSMg01no408_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:48 2005
(345 letters)
>mm_chr5_77544085_77544830
Length = 746
Score = 607 bits (314), Expect = e-178
Identities = 335/342 (97%), Gaps = 1/342 (0%)
Strand = Plus / Plus
Query: 1 acagctctgcgggcaacgcgccaaacctcagcgcctggaccaaggcccaattaatgaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagctctgcgggcaacgcgccaaacctcagcgcctggaccaaggcccaattaatgaaag 260
Query: 61 gctattttcttttggacatagaatgtacaaacaaggaacaatcaaagcagagggcccgac 120
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gctattttcttttggacacagaatgtacaaacaaggaacaaccaaagcagagggcccgac 320
Query: 121 ccgtatgagacaatgttaggctccctcgaacgctcttcatttttctttctgcattcgccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccgtatgagacaatgttaggctccctcgaacgctcttcatttttctttctgcattcgccc 380
Query: 181 tttgttaatgaagttcctatctgagggttgaaagagtcccccg-cggaagctccctttaa 239
|||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 381 tttgttaatgaaattcctatctgagggttgaaagagtcccctggcggaagctccctttaa 440
Query: 240 aagtcagcctgtgagcgagactgtgtgaggatggagccaggcaacagtacccaagggctc 299
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtcagcctgtgagcgagactttgtgaggatggagccaggcaacagtacccaagggctc 500
Query: 300 ctgtgaccggtgcaggtgccagagtgtggataggggtgtgag 341
||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 ctgtgaccggtgcagatgccagagtgtggataggggtgtgag 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 746
Length adjustment: 9
Effective length of query: 336
Effective length of database: 737
Effective search space: 247632
Effective search space used: 247632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
