TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTTATAATCTGAGGGTAAATGCTATTTCCTAAGAATATATATATAT
ATATCATTATCTATTGCAGAATAATTAATCATCCTATGTTCTGTGACATA
AAATAATAATTTGATACAGTTTAAGATTTCTGAGATTGACTTTAGAAATC
AATCTTGTAGTTTCTCAGAAATTTGAGAATAGTTCAACCTCATGTCCCAG
CTATATCACTCCTAGTCATTTACCCAAAAGATGCACCAATACAACACAGG
AATACTTGTTCAATTGTGTTCAAAGGGGCTTTTATTCATAATATCTAGAA
ACTGGAAACAACTTAGATGTCCCTCAAATGAAGAATAGATAAAGAAACTA
TGGGTCATTTACAAAATTGAAAAACTATCAGCTATTAAAAGCAAAAAAAA
AAAATCATGAAATTTGCAAGCAAATTGATGGAACTTGAGAATATCATACT
GAGTGAGGTAAATCCGACTCAGAAAGACATATATGGTATATGCTTACTTA
TTATTTGCATTAGCCTTTAAAGTCAGGAAACCATACTACAATCTACAGAC
CTAAAGAACTAGGTAGTAAGGAGGTTCCAACGAGGATGAATGGCCTCATT
TTTATGGGAAAAAATTGCTTCTGAAAATGTGGCCCGAAAAATGATGAAAA
AGGTGGAAAAAAATTGGGAATGGGGGGCCTGCTTCCCAAAATTTCCGGGA
ATTTCGC

GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAGTTTCATTCTATACACCATTTTTTGAT
TGGGTTGCTTGGTGTTTTTGGTTATAAACTGCTTGAGTTCTTTCTATATT
TTGGATACTAGCTCTCTATTATTCGATGTGGGTTTAGTTAAGATTTTTTT
TCCCAATCTGTAGGTTGCTGATTTGGCTTATTGACTATGTCCTTTGCCTT
ACAGAAGCTTTTCAGTTTCATGAGGTCCCATTTATCAATTCTTGATCTTA
GAGCATTAGCCACTGGAGTTTTGTTTAGGAAATTTCCTCTGTGCCCATGA
ATTCAAGGCTCTTTCCTACTTTCTCTTCTATTAGATTCAGTGTATCTGGT
TTTATGTTGAGGTTTTTGATCCACTTTAGACTTGAGCTTTGTACAAGGTG
ACAGATATGGATCTTTTTTTTTTTTTTCATTCTTCTACNGACAGACCGAC
AGTTACCCCAGCACCATTTACTGAAGATGTTTCTTTTTTTTCCCTGGATA
TCTTTGGGACCCTTTGCCCCGAATTAGGGGCCTTTATCGGGAATATTTTA
TTTTTCGGCCCTTTACATTAATCCCATGGACATATTTGTCGTGTCTTTGC
GTAATACCTGGCCCTTTTTTTCCCCCTTCCTTTTGGACAATTACTTTTTA
ATTTTCCGTCTTTTTTTTTCCCCATTTTTCTTCTTTTTTTTCAATTTTTG
TCCTTGCCCTTTGGTTCCTCTCTATTTTCCCTTA

Query= MSMg01no408_p23.b1 MSMg01no408_p23.b1 CHROMAT_FILE:
MSMg01no408_p23.b1 PHD_FILE: MSMg01no408_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:11 2005
         (462 letters)



>mm_chr5_61093780_61094643
          Length = 864

 Score =  762 bits (394), Expect = 0.0
 Identities = 440/460 (95%), Gaps = 10/460 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttataatctgagggtaaatgctatttcctaaga--atatatatatatatatc 62
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 205 gaattcttttataatctgagggtaaatgctatttcctaagaatatatatatatatatatc 264

                                                                       
Query: 63  attatctattgcagaataattaatcatcctatgttctgtgacataaaataataatttgat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attatctattgcagaataattaatcatcctatgttctgtgacataaaataataatttgat 324

                                                                       
Query: 123 acagtttaagatttctgagattgactttagaaatcaatcttgtagtttctcagaaatttg 182
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 325 acagtttaagatttctgagattgactttagaaatcaatcttgcagtttctcagaaagttg 384

                                                                       
Query: 183 agaatagttcaacctcatgtcccagctatatcactcctagtcatttacccaaaagatgca 242
           || |||||||||||||||||||||||||||    ||||| ||||||||||||||||||||
Sbjct: 385 aggatagttcaacctcatgtcccagctata----tcctattcatttacccaaaagatgca 440

                                                                       
Query: 243 ccaatacaacacaggaatacttgttcaattgtgttcaaaggggcttttattcataatatc 302
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaatataacacaggaatacttgttcaattgtgttcaaaggggcttttattcataatatc 500

                                                                       
Query: 303 tagaaactggaaacaacttagatgtccctcaaatgaagaatagataaagaaactatgggt 362
           |||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||
Sbjct: 501 tagaaactggaaacaacttagatggccctcaaatgaagaatggataaagaaagtatgggt 560

                                                                       
Query: 363 catttacaaaattgaaaaactatcagctattaaaagcaaaaaaaaaaaatcatgaaattt 422
           ||||||||||||| ||||| |||||||||||||||||||||||||    |||||||||||
Sbjct: 561 catttacaaaattaaaaaaatatcagctattaaaagcaaaaaaaa----tcatgaaattt 616

                                                   
Query: 423 gcaagcaaattgatggaacttgagaatatcatactgagtg 462
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gcaagcaaattgatggaacttgagaatatcatactgagtg 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 864
Length adjustment: 10
Effective length of query: 452
Effective length of database: 854
Effective search space:   386008
Effective search space used:   386008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)