Query= MSMg01no409_a20.b1 MSMg01no409_a20.b1 CHROMAT_FILE:
MSMg01no409_a20.b1 PHD_FILE: MSMg01no409_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:16 2005
(543 letters)
>mm_chr5_141721397_141722339
Length = 943
Score = 977 bits (505), Expect = 0.0
Identities = 534/549 (97%), Gaps = 10/549 (1%)
Strand = Plus / Plus
Query: 5 gaattcctaaagagtcaagttgttacttctggaaggcaggtggcaatgcatgctttcttt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaaagagccaagttgttacttctggaaggcaggtggcaatgcatgctttcttt 264
Query: 65 atgctgtgcaccacatatgaatggttcagaaagggggcttctgaggtaagggatacatca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgctgtgcaccacatatgaatggttcagaaagggggcttctgaggtaagggatacatca 324
Query: 125 tagggacaggggtgtcttgtgctagctttatgggaagagtagacagaagcagacagatcc 184
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagggacaggggtgtcctgtgctagctttatgggaagagtagacagaagcagacagatcc 384
Query: 185 actgaccaatcaggttagcagaatttctaagctctgatctctgtgagagaccccatctta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actgaccaatcaggttagcagaatttctaagctctgatctctgtgagagaccccatctta 444
Query: 245 aaataaaatgttacctccagtctcttggatctgttcttctcaaacattagcattaggtgg 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaataaaatgttaactccagtctcttggatctgttcttctcaaacattagcattaggtgg 504
Query: 305 gacatttgagagaatgcaggaccagctcatttcttgtgagccaccaagtgcttttcaggc 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacatttgagagaatgcaggaccagctcatttcttgtgagccaccaagtgcttttcaggg 564
Query: 365 gactctcatgtccactg--attt--------ctggctacattgcttttgtccagttatca 414
|||||||| |||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 565 gactctcaagtccactgtcatttaacaatctctggctacattgcttttgtccagttatca 624
Query: 415 gctgactttctggaaacttccccaaccctgtgtttcacaaacttgactgcacactagata 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gctgactttctggaaacttccccaaccctgtgtttcacaaacttgactgcacactagata 684
Query: 475 gatcccctgggagatttgaggcaggatcgtactactgggcttgaagtttgtcctaagcag 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gatcccctgggagatttgaggcaggatcgtactactgggcttgaagtttgtcctaagcag 744
Query: 535 tagggttta 543
|||||||||
Sbjct: 745 tagggttta 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_a20.g1 MSMg01no409_a20.g1 CHROMAT_FILE:
MSMg01no409_a20.g1 PHD_FILE: MSMg01no409_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:16 2005
(474 letters)
>mm_chr5_141902396_141903266
Length = 871
Score = 787 bits (407), Expect = 0.0
Identities = 424/431 (98%), Gaps = 3/431 (0%)
Strand = Plus / Minus
Query: 44 taatcccagcacccaggaggcagaggaaggagatagagaattcaaggacatcctgggcca 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 taatcccagcacccaggaggcagaggaaggagatagagaattcaaggacatcctgggcca 812
Query: 104 tgtggcaagtgctgagttacatagcaatttagaagccagcctgggatacatgagatcatg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 tgtggcaagtgctgagttacatagcaatttagaagccagcctgggatacatgagatcatg 752
Query: 164 gagcattaaaaaataaaataaaacattaaaattaaaaaagtaactaataaaattaactaa 223
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 751 gagcattaaaaaataaaataaaacattaaaatttaaaaagtaactaataaaattaactaa 692
Query: 224 ttacattagttaattaaatacagcctttttcaaaaaaaataagaactgcaaacaaaagag 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ttacattagttaattaaatacagcctttttcaaaaaaaataagaactgcaaacaaaagag 632
Query: 284 atttcaattttaaggctttgtagtaacagaagaaaaacacaatttcccctgccctagaac 343
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 631 atttcaattttaaggctttgtattaacagaagaaaaacacaatttcccctgccctagaac 572
Query: 344 aactgtgctctgaaacaagcattcctgactgtcactcacatagtggcatgtcagagtgcc 403
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 571 aactgtgctctgaaacaagcattccagactgtcactcacatagtggcatgtcagagtgcc 512
Query: 404 agcactcagaaaaaagtgtactacatactttgatctactttacaattgttaaatcccagt 463
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 511 agcactcag---aaagtgtacaacatactttgatctactttacaattgttaaatcccagt 455
Query: 464 tgaaatacact 474
|||||||||||
Sbjct: 454 tgaaatacact 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 871
Length adjustment: 10
Effective length of query: 464
Effective length of database: 861
Effective search space: 399504
Effective search space used: 399504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
