Query= MSMg01no409_a23.b1 MSMg01no409_a23.b1 CHROMAT_FILE:
MSMg01no409_a23.b1 PHD_FILE: MSMg01no409_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:16 2005
(656 letters)
>mm_chr5_73480655_73481710
Length = 1056
Score = 731 bits (378), Expect = 0.0
Identities = 464/498 (93%), Gaps = 13/498 (2%)
Strand = Plus / Minus
Query: 5 gaattcttcccagattccgttttaaaaagattgctgtaagcctttcgtatgcaggatgag 64
|||||||||||||| || ||||||||||||||||||||||||| || |||||||||||||
Sbjct: 487 gaattcttcccagactctgttttaaaaagattgctgtaagcctgtcatatgcaggatgag 428
Query: 65 tttctcttccctctctccagatatggctactttgttattttaagtaaactcatactaacc 124
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||
Sbjct: 427 tttctcttccctctctccagatatggctattttgttattttaagtaaacgcatacaaacc 368
Query: 125 tttggctctcaagcacatgtgtggtatttttaaaagggtcctttaagtacatagttaggc 184
|||||||||||||||||||||| |||||||||| |||||||||||||| |||| |||||
Sbjct: 367 tttggctctcaagcacatgtgttgtatttttaacagggtcctttaagttcataactaggc 308
Query: 185 ttgttaattttaaacataggagcccgactttgttctttgaaaggaaaataatattg-ctt 243
|||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||
Sbjct: 307 ttgttaattttaaacataggagccttactttgttctttgaaaggaaaataata-tgactt 249
Query: 244 gagggtcaagagcatatttttcctttatgttttctgtgtgggaagtggcagatgtaagtg 303
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 248 gagggtcaagagcatatttttcctctatgttttctgtgtgggaagtggcagatgtaagtg 189
Query: 304 gcacttgggaggcagaggcaggaggatttctgagttcgaggccagcctggtctacaaagt 363
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 188 gcacttgggaggcagaggcaggaagatttctgagttcgaggccagcctggtctacaaagt 129
Query: 364 gagttccaggacagccagggctacacagagaaaccctgtttcgagggggaaaaaaaaaaa 423
||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 128 gagttcctggacagccagggctacacagagaaaccctgtttcgag---------aaaaaa 78
Query: 424 aaagcccttg-ttatgcaatgaatccatccctgttggtaatgccttcatacacagccagg 482
|||||||||| ||| |||||||||||||||| ||||||||| | ||||||| ||||||||
Sbjct: 77 aaagcccttgttta-gcaatgaatccatccccgttggtaatacgttcatacgcagccagg 19
Query: 483 aagaggccggtcctgact 500
||||||||||||||||||
Sbjct: 18 aagaggccggtcctgact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_a23.g1 MSMg01no409_a23.g1 CHROMAT_FILE:
MSMg01no409_a23.g1 PHD_FILE: MSMg01no409_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:16 2005
(544 letters)
>mm_chr5_73300093_73301036
Length = 944
Score = 986 bits (510), Expect = 0.0
Identities = 530/544 (97%), Gaps = 12/544 (2%)
Strand = Plus / Plus
Query: 1 tgcgtagatgtggcagtttggacatttaattccagtactcaggaggcatatttgcgctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tgcgtagatgtggcagtttggacatttaattccagtactcaggaggcatatttgcgctca 272
Query: 61 aagccagtctgatctacagagtgggttccaggccagctaggtctggatgctgagactaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aagccagtctgatctacagagtgggttccaggccagctaggtctggatgctgagactaga 332
Query: 121 aacattcctggagactgggcttggtggtgcacacctttaatcccagtactctggaggtag 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 333 aacattcctggagactgggcttggtagtgcacacctttaatcccagtactctggaggtag 392
Query: 181 aggcaggtggatctctgtgagttcaaggccagtttggtgtacaaaaaaagattgaagcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aggcaggtggatctctgtgagttcaaggccagtttggtgtacaaaaaaagattgaagcca 452
Query: 241 gttagggccatacagtgacaccctgtctcaaagcaccaaaataaatggagaaagaaaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gttagggccatacagtgacaccctgtctcaaagcaccaaaataaatggagaaagaaaatt 512
Query: 301 agaaaggccctatctcaaaacaccaaaataaatggagagagagagagagagacagagaga 360
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agaaaggccctatctcaaaacaccaaaataaatggagagagagagaga------------ 560
Query: 361 cagagagaaattagttccttgaattctttttttaaaaacatattttcccaaagaggcccc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 cagagagaaattagttccttgaattctttttttaaaaacatattttcccaaagacgcccc 620
Query: 421 agatagaccaaagggaggcacatctggaggaaggacgctgttgaaggacagatgcaagac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agatagaccaaagggaggcacatctggaggaaggacgctgttgaaggacagatgcaagac 680
Query: 481 gacaggaggaaatgactgaccaagtgtgtgcaatgaagataaagtggaagccccgatagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacaggaggaaatgactgaccaagtgtgtgcaatgaagataaagtggaagccccgatagt 740
Query: 541 gaag 544
||||
Sbjct: 741 gaag 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
