Query= MSMg01no409_e16.b1 MSMg01no409_e16.b1 CHROMAT_FILE:
MSMg01no409_e16.b1 PHD_FILE: MSMg01no409_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:36 2005
(549 letters)
>mm_chr5_25282545_25283492
Length = 948
Score = 700 bits (362), Expect = 0.0
Identities = 395/410 (96%), Gaps = 8/410 (1%)
Strand = Plus / Minus
Query: 147 cctcattagcatggagaactctacctggggttgcaagactacaggtcatgtttccttatg 206
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 948 cctcattagcatggagaattctacctggggttgcaagactacaggtcatgtttccttctg 889
Query: 207 tgggaagtgtggcacgtattccaggccagtatctggcag-------ggaggcaccttctg 259
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 888 tgggaagtgtggcacgtattccaggccagtatctggcagggagcaaggaggcaccttctg 829
Query: 260 tctcaggtgagtacctgggaaacgaggactcagacccgctctaccttaccaagctccctg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tctcaggtgagtacctgggaaacgaggactcagacccgctctaccttaccaagctccctg 769
Query: 320 gcagggtccactgtcccacaactcttcttctttttataaaggagaagcaaccctggagtg 379
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 768 gcagggtccactgtcccacaactcctcttctttttataaaggagaggcaaccctggagtg 709
Query: 380 gctgtcttctgtgttatgcatagtagaaattttgggtggggtgagtgaagcatcaaaata 439
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 708 gctgtcttctgtgttatgcatagtagaaattttgggtggggtgagtgatgcatcaaaata 649
Query: 440 aaataaaacataacccagcgggggtaacaaggggtgagggctaggaagacaagggattat 499
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 648 aaataaaacataacccag-ggggataacaaggggtgagggctaggaagacaagggattat 590
Query: 500 taattgttcagtggattgtacagtttataagggtattaacatcagtttta 549
||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 589 taattgttcagtgaattgtacagtttataagggtattaacatcagtttta 540
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 948
Length adjustment: 10
Effective length of query: 539
Effective length of database: 938
Effective search space: 505582
Effective search space used: 505582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_e16.g1 MSMg01no409_e16.g1 CHROMAT_FILE:
MSMg01no409_e16.g1 PHD_FILE: MSMg01no409_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:36 2005
(461 letters)
>mm_chr5_25110631_25111491
Length = 861
Score = 783 bits (405), Expect = 0.0
Identities = 432/453 (95%), Gaps = 19/453 (4%)
Strand = Plus / Plus
Query: 1 tcagtgcctgtactggctatctttttaaaagcagacaggatctttgaaaatacagtctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtgcctgtactggctatctttttaaaagcagacaggatctttgaaaatacagtctca 260
Query: 61 aaaggataactgattccctggcccctgaatcatctcatctgctgtaatagtagttttcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggataactgattccctggcccctgaatcatctcatctgctgtaatagtagttttcat 320
Query: 121 atgaaattaactagaaagtaatgtcatgggctggggacaaagcacaggtggtctagcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaaattaactagaaagtaatgtcatgggctggggacaaagcacaggtggtctagcagg 380
Query: 181 cttgttctaggtttgttctagttgttgattcccaacaactcataaactgagtgtggctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgttctaggtttgttctagttgttgattcccaacaactcataaactgagtgtggctca 440
Query: 241 tgtctgtaatctcagcactcaagaggtggaggcagggggatcaggatttcaaagtctttc 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtctgtaatcccagcactcaagaggtggaggcagggggatcaggatttcaaagtctttc 500
Query: 301 ttggtaagttcaagaccatctttggctgcttatcaagttggagatcatcctcagctacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggtaagttcaagaccatctttggctgcttatcaagttggagatcatcctcagctacat 560
Query: 361 gagaccctgactcaagacaaaaacaaaacaaaacaaaacaaactaaacaactgcaaagta 420
||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 gagaccctgactcaagacaaaaacaaaacaa-------------------ctgcaaagta 601
Query: 421 aacacttcagagtatgtggtgtgtgtgtgtgtg 453
|||||||||||||||||||||||| ||||||||
Sbjct: 602 aacacttcagagtatgtggtgtgtatgtgtgtg 634
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
