Query= MSMg01no409_i23.b1 MSMg01no409_i23.b1 CHROMAT_FILE:
MSMg01no409_i23.b1 PHD_FILE: MSMg01no409_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:58 2005
(499 letters)
>mm_chr5_69431286_69432186
Length = 901
Score = 866 bits (448), Expect = 0.0
Identities = 487/504 (96%), Gaps = 11/504 (2%)
Strand = Plus / Plus
Query: 5 gaattcactaactattccttccctgctggggcatttagcctttagtagccttgaggtcta 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaattcactaactac-ccttccctgctggggcatttagcctttagtagccttgaggtcta 258
Query: 65 aactgtgcagaatgtaaatcctcattaatttaaagtaaaagaaagtcacaaatgtagtag 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 259 aactgtgcagaatgtaaatcctcattaatttgaagtaaaagaaagtcacaaatgtagtag 318
Query: 125 tcacttacaatactctattttctaattcaaagtgatggggaattagaagtaagaaaacta 184
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tcacttacaatactctatcttctaattcaaagtgatggggaattagaagtaagaaaacta 378
Query: 185 ttctctagacagctagtcaggtcacagacataagcaaacaaaagtgtatgtatgtcctgg 244
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atctctagacaactagtcaggtcacagacataagcaaacaaaagtgtatgtatgtcctgg 438
Query: 245 caaaactggaagctaagtgtaagaaaaaatgtttcttagtaaactctacacaatgagtga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caaaactggaagctaagtgtaagaaaaaatgtttcttagtaaactctacacaatgagtga 498
Query: 305 aaaaggctagggccaaataaagagctcaggatttcaaagactacccagcctcattaaaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaaaggctagggccaaataaagagctcaggatttcaaagactacccagcctcattaaaaa 558
Query: 365 gaaaaaaaaa--aaaaac------caaaaaaacaattgtcaggctttcttctttttaatt 416
|||||||||| |||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 559 gaaaaaaaaacaaaaaacaaaaaacaaaaaaa-aattgtcaggctttcttctttttaatt 617
Query: 417 ttctgatttcttttacatggggcctatggtgggcttttcctgagtctgtactcttccatt 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 618 ttctgatttcttttacatggggcctatggtgggcttttcctgagtctgtactcttcaatt 677
Query: 477 ctatctcttgaccaatca-ttcaa 499
|||||||||||||||||| |||||
Sbjct: 678 ctatctcttgaccaatcaattcaa 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 901
Length adjustment: 10
Effective length of query: 489
Effective length of database: 891
Effective search space: 435699
Effective search space used: 435699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_i23.g1 MSMg01no409_i23.g1 CHROMAT_FILE:
MSMg01no409_i23.g1 PHD_FILE: MSMg01no409_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:58 2005
(455 letters)
>mm_chr5_69642518_69643372
Length = 855
Score = 857 bits (443), Expect = 0.0
Identities = 452/455 (99%)
Strand = Plus / Minus
Query: 1 ttaagcagctcatactgagatttgattgtagttgtctagtaaactgctaacctagctaaa 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 465 ttaagcagctcatactgagatttgattctagttgtctagtaaactgctaacctagctaaa 406
Query: 61 gttcataccatttttaaaataaggtgccaaaatgttgaaattaaatcatatggatcatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gttcataccatttttaaaataaggtgccaaaatgttgaaattaaatcatatggatcatgg 346
Query: 121 atttctttatatgttttccagcttatagagacaaaatcttcaaaacagatgagtaggttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 atttctttatatgttttccagcttatagagacaaaatcttcaaaacagatgagtaggttt 286
Query: 181 agcttgttataatatttcatactgttttcatctcccatttatagcccttaaatttattct 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 agcttgttataatatttcgtactgttttcatctcccatttatagcccttaaatttattct 226
Query: 241 ttatgtctgtcttttgctggttccattatttgtttcagacagaatctttctatgttgcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ttatgtctgtcttttgctggttccattatttgtttcagacagaatctttctatgttgcac 166
Query: 301 tggctgtcttgggactcatgaaaaacacagaggccaagctggacactacctggtgaccat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tggctgtcttgggactcatgaaaaacacagaggccaagctggacactacctggtgaccat 106
Query: 361 cctgtatcttagccttgtttaattcctcttaaccttgtgatataattattgcaaggctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 cctgtatcttagccttgtttaattcctcttaaccttgtgatataattattgcaaggctct 46
Query: 421 attctcaatctaatctacataatatttaaaccact 455
||||||| |||||||||||||||||||||||||||
Sbjct: 45 attctcattctaatctacataatatttaaaccact 11
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
