BAC Information

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BAC

Clone NameMSMg01-409L18
Chromosome5 (Build37)
Map Location 27,404,299 - 27,404,768
singlet/doubletsinglet
Overlap geneDpp6
Upstream geneLOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik, B930011P16Rik
Downstream geneSpeer4b, Paxip1, Htr5a, EG433862, LOC231069, Insig1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409L18.T7 (MSMg01no409_l18.b1)MSMg01-409L18.TJ (MSMg01no409_l18.g1)
ACCAG507149AG507150
length794867
length of high quality
(start - end)		474 (51 - 524)126 (73 - 198)
definitionCHROMAT_FILE: MSMg01no409_l18.b1 PHD_FILE: MSMg01no409_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:12 2005CHROMAT_FILE: MSMg01no409_l18.g1 PHD_FILE: MSMg01no409_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATCCACAGTAATTTGAATTTCAAAACCAAAATATCTTTAA
AAAAAACCCAACCTATAGGCATTTTGGAAGGAAAATAAATCATGTTTAAC
AAATCATTTTAGGTGAATTTTACTCTCCCAAATTAAACTCTAAACCAGGT
GGCTTCCTTTGGCTCCCTCATCCAATCCTTTGCATGTACTTCCCTGTGCC
ATGTGATACTGAGGTTGCCATGACAACCACTCATTTCTTTTTAGGAGTTG
GCTAGATATTTTAAAAACAACAACAAAAGGTCCCTGAATATTTCTAGCCT
CCAGATCTTCCTCATGTACATCTTACAGCAGTTTCTAATATAGTCACCTG
TCAGTAGGCAATCCACCATCACTCTGTCACTAAATGACGACCTTAGGGAC
AAATTTATCCCTGAGACATCTTCTCCTCACCACTGCTCATCCGGTAACAG
GATGTTCACACTCTCTTCTCAGGNTAGGAAGTCTATATAGTGTTACTATC
TATTATAGGGGTATAACTATTATTATGGGAGAAATGGGTAACAGATATAT
GTTTATGACAGTTGAGATGATTAGTAAGAAAAAACATTATTTTTTTAATG
TTGCTGGTCTCACGACTTTTTTAAAGAAATTTCTTTGGGGTGGGTTTGAA
TTCCTCCGTTTTTACAAGCTGGGAATAAATACTGTCTCTCTATATTTACT
TTAATATATTTCTTTCACTTTTGTATTATATTCTTCTTGTCGTA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAGGTAGGGAACTTGAGAGCCTTGAGC
AGAGACAATGAATTAGTGTATGCATACCTGTGCACAGCTCACTTCCTTAC
TTTGTTTTGGGGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTT
TNTNTTGTTTTTNTTTTTTTTTTTTTTTTTTTTTNTTTTGTTTTTTTTTT
TTTTTTTNTNTTTTNTTTTTTTTTTTTNTTTTTTTTTGTNNTTTTTTGTT
TGTNTTGTGTTTTGTTTTTTTTTTTTTGNGGGGGGTTNTGTGGTTTTGTT
TGTGTGTTTTTTTTTGTTTGTTGTGTGTTGTGTTGTGTTGTTTTTTGTTG
TTTGTGTTTTTTTTTTTTTCCTCCTCTTTTTTTTTGTTTTTTTTTTTCGG
TTCTCTTTGCCCTCTTTCTCTTTTTTCCTCTCCCTTTTTGTTTTTCCGCT
TTTTGTCGTTCCGTCTCCCCTCTTTGGTCTGTTCTTTTTTCTGTTCCTTT
CTCTTCTGTCCGCTCTTCTTTTTCCGCTTTTTCTTGTTGCCTTCCTCTCG
TTCTTTTTCCTTCTTCCTTTTCTTTTCTTCTTTCGTTCCTGCTTGGCTTC
TGTGCCCTTTTTTCTTTCTTTTTCCTTCTCCCCCGTGTCTTTTTTTCCTT
TCTTGTTGCTCTTGCTTTCTTCTTTTTTCTGTTTATTCCCTCCCTTCTTC
TTTTTTTGTCTGCCTTTTTTGCCTTTTTTTGGCCGCTTTTTTCTGTTTTG
CCTTCCTTTTTTGTCTCTTCTCCCCGTTCCCCTTTTCTCTCCTCCCTCTC
TTTCTTTCTTCCCTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_l18.b1 MSMg01no409_l18.b1 CHROMAT_FILE:
MSMg01no409_l18.b1 PHD_FILE: MSMg01no409_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:12 2005
         (474 letters)



>mm_chr5_27404096_27404969
          Length = 874

 Score =  901 bits (466), Expect = 0.0
 Identities = 469/470 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatccacagtaatttgaatttcaaaaccaaaatatctttaaaaaaaacccaacc 63
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 673 ggaattcatccacagtaatttgaatttcaaaaccaaaatatcttaaaaaaaaacccaacc 614

                                                                       
Query: 64  tataggcattttggaaggaaaataaatcatgtttaacaaatcattttaggtgaattttac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tataggcattttggaaggaaaataaatcatgtttaacaaatcattttaggtgaattttac 554

                                                                       
Query: 124 tctcccaaattaaactctaaaccaggtggcttcctttggctccctcatccaatcctttgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tctcccaaattaaactctaaaccaggtggcttcctttggctccctcatccaatcctttgc 494

                                                                       
Query: 184 atgtacttccctgtgccatgtgatactgaggttgccatgacaaccactcatttcttttta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atgtacttccctgtgccatgtgatactgaggttgccatgacaaccactcatttcttttta 434

                                                                       
Query: 244 ggagttggctagatattttaaaaacaacaacaaaaggtccctgaatatttctagcctcca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ggagttggctagatattttaaaaacaacaacaaaaggtccctgaatatttctagcctcca 374

                                                                       
Query: 304 gatcttcctcatgtacatcttacagcagtttctaatatagtcacctgtcagtaggcaatc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gatcttcctcatgtacatcttacagcagtttctaatatagtcacctgtcagtaggcaatc 314

                                                                       
Query: 364 caccatcactctgtcactaaatgacgaccttagggacaaatttatccctgagacatcttc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 caccatcactctgtcactaaatgacgaccttagggacaaatttatccctgagacatcttc 254

                                                             
Query: 424 tcctcaccactgctcatccggtaacaggatgttcacactctcttctcagg 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tcctcaccactgctcatccggtaacaggatgttcacactctcttctcagg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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