BAC Information

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BAC

Clone NameMSMg01-409M02
Chromosome5 (Build37)
Map Location 23,153,778 - 23,154,179
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2
Downstream genePus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409M02.T7 (MSMg01no409_m02.b1)MSMg01-409M02.TJ (MSMg01no409_m02.g1)
ACCAG507165AG507166
length767728
length of high quality
(start - end)
77 (52 - 128)404 (119 - 522)
definitionCHROMAT_FILE: MSMg01no409_m02.b1 PHD_FILE: MSMg01no409_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:14 2005CHROMAT_FILE: MSMg01no409_m02.g1 PHD_FILE: MSMg01no409_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGA
TCCGCGGAATTCACTGGTTTCTCCATATTCATGGATTTGTTATATATTTT
TCTTAATATATCTAAAATATTATTTTAACACGTAGCATAAAGATATTGAG
ATATTTATTCCTTTTATTATCCTGTATTTGAACTCTTATGGATTTTGATC
TTACAACATATGCTAATTCAAATGAGGCATACTTACACATGCTCATTAGC
ACGAGTGACTACTGTACTACTAAATATAGCATACTCTAGACAACTAAGAT
AATAGATCTCATAGGAGAACAGAGTAGGCTAGTTAGGGAGGCTCTGATTG
CTGGGCTGTCCTTTGTGCATGAGAGTTAACATGGGACTCCTTTTGTTACA
GATTGAATAAACCGAAGTCACAGCAAACCAGTGTTGGAAGCGCATGGAGG
TGCATATGTCTTTAGGCTTTTGCTGACACAGCACTGTTAGCAAGAGTACA
GCACTGATGTATGACCTGTAGGTGTTGGATTTTGACGTTCCCATGTGTGT
GTATGTGCTTCTGGTTTAACAGTGCTTTATTCTTTACATTAGATCACCGT
ATTATTCTAGATTCAGCCCTGGTCTGGGCCACACGATTATTCTCTGATTT
TACCTTCCCTACTACTCCAATGGTTGGTTTCCAAAAACCTTTCTTTTATG
GCTTTTCTCTATGGCCTTCTTTCCCGTTCATCCTCTTCGATCCATAACGT
TATTGTGTATTCCTCTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTGGCCC
TTCTCCCTCAAAGGTGCAAGCTCTGTGTCTGTGGGAAATGGGGCAACACG
GAAGGGCCTCAAACAGGACAATAATGGGATCAGTTATTTTCAGAGACTTG
GCTCTGCAGGAGTGTGGATCAGGATTAGAACAGTGAGAGACAATGCTGGG
TCAGAAACAACAGAGCCTCCCACCGGTATGGATGCACACAGATGAAAATT
CTGTTTATTTTCAATAAAAAATTCAAGTCTTTTAGCTATATGGATTGGAT
ATGAAACTCTCTTAGTAAACTCTATAATACTGGGAATATACTATATAGGT
TTTAAAAAAGGAAAAGATAATCTCATGATGCTATACAAAAAGAATCTTTT
AGTTGAATATGTAGAAATTTGCATTACCCTTTGGTAGTCCCTCCCCCCAC
TTGCCTCCCTTGGATTCTCCGGCATTGTCCCAGCCAGTGTTGAACGCCAG
GCTTGATGCTGTCCCTTCAGCTCTCCTGACGGCAGGACTATAGGTGTGCT
ATGCCATGCCTGGTCTCTTAATTTGGAAGCCATAACTGTATGTGAATATT
ATTTTTGCCATCAATATGTGTGCATGAATATCATGCTCTGTACATCTTTC
TGTTTTATTTCTTTCTCTTTTGGCGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_m02.g1 MSMg01no409_m02.g1 CHROMAT_FILE:
MSMg01no409_m02.g1 PHD_FILE: MSMg01no409_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:14 2005
         (404 letters)



>mm_chr5_23153578_23154381
          Length = 804

 Score =  770 bits (398), Expect = 0.0
 Identities = 401/402 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctctgtgtctgtgggaaatggggcaacacggaagggcctcaaacaggacaataatggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 agctctgtgtctgtgggaaatggggcaacacggaagggcctcaaacaggacaataatggg 543

                                                                       
Query: 61  atcagttattttcagagacttggctctgcaggagtgtggatcaggattagaacagtgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 atcagttattttcagagacttggctctgcaggagtgtggatcaggattagaacagtgaga 483

                                                                       
Query: 121 gacaatgctgggtcagaaacaacagagcctcccaccggtatggatgcacacagatgaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gacaatgctgggtcagaaacaacagagcctcccaccggtatggatgcacacagatgaaaa 423

                                                                       
Query: 181 ttctgtttattttcaataaaaaattcaagtcttttagctatatggattggatatgaaact 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 422 ttctgtttattttcaataaaaaattcaagtcttttagctatatggattggttatgaaact 363

                                                                       
Query: 241 ctcttagtaaactctataatactgggaatatactatataggttttaaaaaaggaaaagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctcttagtaaactctataatactgggaatatactatataggttttaaaaaaggaaaagat 303

                                                                       
Query: 301 aatctcatgatgctatacaaaaagaatcttttagttgaatatgtagaaatttgcattacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aatctcatgatgctatacaaaaagaatcttttagttgaatatgtagaaatttgcattacc 243

                                                     
Query: 361 ctttggtagtccctccccccacttgcctcccttggattctcc 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctttggtagtccctccccccacttgcctcccttggattctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)