BAC Information

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BAC

Clone NameMSMg01-410A08
Chromosome5 (Build37)
Map Location 145,160,801 - 145,161,032
singlet/doubletsinglet
Overlap genenone
Upstream geneKdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
Downstream gene4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410A08.T7 (MSMg01no410_a08.b1)MSMg01-410A08.TJ (MSMg01no410_a08.g1)
ACCAG507368AG507369
length779791
length of high quality
(start - end)
246 (81 - 326)245 (80 - 324)
definitionCHROMAT_FILE: MSMg01no410_a08.b1 PHD_FILE: MSMg01no410_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:37 2005CHROMAT_FILE: MSMg01no410_a08.g1 PHD_FILE: MSMg01no410_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAA
TCCGCGGAATTCACTTAGTTTGCTCTGGAGACAGCAGTTTGATTCTTTTT
TTTTTTTTTAAGTATCATTTAATGTATATGTAAGTACACTGTCGCTGTCT
TCCGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGCGC
CACCATGTGGTTGCTGGGAATTGAACTCAGGACCTGTGGAAGAGCAGTCA
GGGCTCTTATCTATTGAGCCATCTCTCCAGCCCGAGGCACAATTTCTTAT
TCTGTACTTTGGACACCAGGCTAGCTGTCTTTTATGATTCTACTCTGGCC
ACCACCCAACTCTGTTAAGAGTCCTGACATTACCGGCATGTGCTACTGTA
TCTGCATTTGTTTTAGTATCACTTCTAGAGATTCAAACTCAGTCCTCGCG
ATTAGGTGGTAGCAGAGGCTTTACCCACTGTGGTGTTTTATTTATGCTTA
TCCCATCGAGTGGCACTATTAGGATTCGTGGTCCTTGTCCGATTATGTGC
CTCCCTGTTGTCCTTGGCATTTTCTTTTTTCCCTCCTTCGTCTTTCCCTT
ACTTTCTGTCTTCCGCGCTTCCTTTCGTTTGCATTCTTTCCAACCTCTCC
ATTTTCCCTCCCCCGCCCCGTCTCTGTTTTGTTACTTCCCACGCTTACCT
CTCCTTCCCTATTTCGCCATTCTCTCCACCCTTTTTTCCCCCCTTTTTAT
CCTCCTTTCTTTCCTCCCCCTCTCCTTTT
NNNCCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATAGCAACTCAGACAGGC
TTTGGATCTGTGTGTGACTTTACTGCTCACCCTCCTAACAGCCAAGAGCA
CAGGTGTGTTCCCTGTGTCATGCTTATCGTATGCCCCTCGCTCCGCTTCA
AGCTGTGCAGTGTAATTTTCACGGATATTTCTATGATGGCCCTTATGTTG
TAGGGAGGCACAGAGAATTTAAGCAGCTTGCCCTAAGTCACACAGCTTGT
AAGTGGTAAAGCCAGGATTCAGATTCTTTTAGTCCACCATCAGGGCCCGT
GTGGGGAGGGGGTTAAACACTGTTTGACAATGTGTGACAGTCACTGAGTC
TCTACTGAACTACTGAACACCACAGAAATGCGTGTGAGTGTTGTGCCAGA
AACACGGCTTGTGTCCGGACAGACCTTATCAGTCCCTTATTGCTCTTACA
GCTCCATTGCGCCCTATGCGTGCTCTATCCTTCTCCCTTTCCCCCCCCTC
CCCTTCCCCTTCTTCCCTTTTTTTCCCTTCTCCTCCCCTCTCTCCCTTCT
TTTCTTTTCTTTATCCCCTTTCCTTTCCCTTCCTCCTTCCATTTCCCTTC
TCGCTTTTTTCCTCCTTTACTTCCCCCCCTTTCGTTTCCCCTTCCCACCC
CAATTTCCCCCCCCCTTTCCCTTCCCCTTATTCCGCCCCCTTTTCCCTCC
CTTTTCTCTCCTTCCCCTTCCCTTTATTATCCCGTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_a08.g1 MSMg01no410_a08.g1 CHROMAT_FILE:
MSMg01no410_a08.g1 PHD_FILE: MSMg01no410_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:37 2005
         (245 letters)



>mm_chr5_145160658_145161302
          Length = 645

 Score =  410 bits (212), Expect = e-119
 Identities = 227/232 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatagcaactcagacaggctttggatctgtgtgtgactttactgctcaccctcctaac 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 actatagcaacccagacaggctttggatctgtgtgtgactttactgctcaccctcctaac 316

                                                                       
Query: 61  agccaagagcacaggtgtgttccctgtgtcatgcttatcgtatgcccctcgctccgcttc 120
           |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 315 agccgagagcacaggtgtgttccctgtgtcatgcttatcgtgtgcccctcgctccgcttc 256

                                                                       
Query: 121 aagctgtgcagtgtaattttcacggatatttctatgatggcccttatgttgtagggaggc 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aagctgtgcagtgtaattatcacggatatttctatgatggcccttatgttgtagggaggc 196

                                                               
Query: 181 acagagaatttaagcagcttgccctaagtcacacagcttgtaagtggtaaag 232
           |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 195 acagagaatttaagcagcttgccctaagtcacacagcttgtaagcggtaaag 144


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)