Query= MSMg01no410_h02.b1 MSMg01no410_h02.b1 CHROMAT_FILE:
MSMg01no410_h02.b1 PHD_FILE: MSMg01no410_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:11 2005
(249 letters)
>mm_chr5_125512827_125513475
Length = 649
Score = 474 bits (245), Expect = e-138
Identities = 248/249 (99%)
Strand = Plus / Plus
Query: 1 cttgctgccacgccagctgtggctcgggtcccaggctggagttacatattccctgttagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgctgccacgccagctgtggctcgggtcccaggctggagttacatattccctgttagg 260
Query: 61 tctcagagggcaccacagagaagggaattattggacatcatggagaggatcgcgggggga 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 tctcagagggcaccacagagaagggaattattggacatcatggagaggatggcgggggga 320
Query: 121 tccaagccggggacacggagcacagctaggtcctagatctcaattgctactcaatgtctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaagccggggacacggagcacagctaggtcctagatctcaattgctactcaatgtctg 380
Query: 181 tgttgttattaaactttataactgtggtgactggcattaagctagagtacagctttgtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttgttattaaactttataactgtggtgactggcattaagctagagtacagctttgtag 440
Query: 241 cctaggtta 249
|||||||||
Sbjct: 441 cctaggtta 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no410_h02.g1 MSMg01no410_h02.g1 CHROMAT_FILE:
MSMg01no410_h02.g1 PHD_FILE: MSMg01no410_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:11 2005
(337 letters)
>mm_chr5_125730863_125731599
Length = 737
Score = 532 bits (275), Expect = e-155
Identities = 316/337 (93%), Gaps = 12/337 (3%)
Strand = Plus / Minus
Query: 1 aagggcagtcaggactacggagcaagatgctattaccaaccccctctccccattaagaat 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aagggcagtcaggactacagagcaagatgctattaccaaccccctctccccattaagaat 373
Query: 61 aaatcaaaagatgtttttggtgatgtggacgggaatacggacagtaaaggatatttggga 120
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 372 aaatcaaaagatgtttttggtgatgtggacgggaatacggacaataaaggatgtttggga 313
Query: 121 tctgggtcccagggaagtgttcatctctgtaggatagttcggcactatgttaagttgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tctgggtcccagggaagtgttcatctctgtaggatagttcggcactatgttaagttgtgt 253
Query: 181 gtgtgcacatgggtatagagatcagaggctgaagccagtgttttcctctgtatcattcat 240
||||| ||||||||||||||||||||| |||||||| || | ||||||||||
Sbjct: 252 gtgtgtacatgggtatagagatcagagactgaagccggtatcttcctctgta-------- 201
Query: 241 tcattcattcattcattcattcattcattcactgtatgcatgtaccatgggacacaccaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 200 ----tcattcattcattcattcattcattcactgtatgcatgtaccatgggacacaccga 145
Query: 301 aagatctaaggacaactcttaggcattcattctcttc 337
|||||||||||||||||||||||||||||||||||||
Sbjct: 144 aagatctaaggacaactcttaggcattcattctcttc 108
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space: 238784
Effective search space used: 238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
