BAC Information

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BAC

Clone NameMSMg01-411B05
Chromosome5 (Build37)
Map Location 86,368,450 - 86,368,763
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411B05.T7 (MSMg01no411_b05.b1)MSMg01-411B05.TJ (MSMg01no411_b05.g1)
ACCAG508174AG508175
length760757
length of high quality
(start - end)
531 (51 - 581)322 (55 - 376)
definitionCHROMAT_FILE: MSMg01no411_b05.b1 PHD_FILE: MSMg01no411_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:00 2005CHROMAT_FILE: MSMg01no411_b05.g1 PHD_FILE: MSMg01no411_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTGTTTTTAATTGCTGAGTAGTACTCCACTGTGTAAATG
TACCACATTTTCTCTATTCATTCCTCTGTTGAGGGGCATCTGGGTTCTTT
CCAGCTTCTGGCTATTATAAATAAGGCTGTTATGAACATAGTGGAGCATG
TGTCGTTATTACAATTTGGAGCATCTTCTGGGTATATGCCTAGGAGAGGA
ATTTCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAGGCCCTA
GACTGATTTCCAGAGTGGTTGTACCAGCTTGCAATCCCACCAACAATGGA
GGAGTGTCCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTAAA
TTTTTTATCTTAGCCATTCTGACTGGTGTGAGCTAGAATCTCAGGGTTGT
TTTGATTTGCATTTCCCTGATGATTAAGGATGTTTAACATTTTTTCAGGT
GCCTCTCAGCGATTCTGTATTCTTCAATTGAGATTTCTTTGTTTAGCTCT
GTACCCCATTTTTAATAGGGTTATTTGATTTTCTAGAGTCAAGCTTCTTG
AGTTTTTTATACATATTGGATATTAATCCCCTATCTGATTTANGATTGGT
AAAGACCCTTTCCCAATCTGTTGGGGGGCTTTTTGTCTTATTGACAGAAG
ACAAAATTCTGTGGGATGAATGAAAACCTGACTGAAATAATCTTGACACG
TTATAGGGCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCACCATCAGCAAGAGGGCCTTTCTCGGGGGTCTTTGTTTTTCATTC
CTCCAGTTTCGTCTGTTCTTGTTTTCTGTTCTAAAGTCGGATATTTGTCA
TCCACCATCTTGGCCTGCTTCAAGAGCTTCTTCTCATTCCCTTTCTGACA
TGGTGTCTTCTACTCCTTCTCCAGACCCTGATCCTTGACACAGGGACTGT
TTTTAGTATCAGTTTTCGGGGGGTGGGGGGGGAGACCTCACAACTAGTTT
ATGGTACAGCTGGGTAGCTTGACTCCAGAGTGTACACTGTTACTCATGAT
GCTATTCTGTTGCTAATAACACAATGATATGAATAAACAAGTGAACAGAT
GCCCACTGGCTTTTTGTATTTTCCATATCCTGAATTATACTTTAAAATAT
CAAATATCAAAATCTCCCTGGCCCTCTTTCCCCCCTTCTTTCTTTCCTTG
GGAAGCCCCTTTATTCTTTGGACTTTTTAATATATAATTGGGGCCGGAAA
AACCCATATACCTTTTTTTCCTTTACCCCGTCCCCCTATCTTCATAATTC
TTTTTTGAACATATTATGGCGGGTGTTGTAATCTTACACAAAANCCTCCA
TTTCCCGTCTCCTTTTTCTCTTCGGATCCCCTATCCTTTACAATTTGCCG
TTATCTATACCCTCCCTCTCTCTCACTTAGCCTCTCCGACAAGCTTTCCT
CATTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_b05.g1 MSMg01no411_b05.g1 CHROMAT_FILE:
MSMg01no411_b05.g1 PHD_FILE: MSMg01no411_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:00 2005
         (322 letters)



>mm_chr5_86368342_86369062
          Length = 721

 Score =  553 bits (286), Expect = e-162
 Identities = 310/322 (96%), Gaps = 8/322 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccatcagcaagagggcctttctcgggggtctttgtttttcattcctccagtttcgtct 60
           ||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||
Sbjct: 422 caccatcagcaagagggcctttctc-ggggtctttgttttccatttctccagtttcgtct 364

                                                                       
Query: 61  gttcttgttttctgttctaaagtcggatatttgtcatccaccatcttggcctgcttcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gttcttgttttctgttctaaagtcggatatttgtcatccaccatcttggcctgcttcaag 304

                                                                       
Query: 121 agcttcttctcattccctttctgacatggtgtcttctactccttctccagaccctgatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 agcttcttctcattccctttctgacatggtgtcttctactccttctccagaccctgatcc 244

                                                                       
Query: 181 ttgacacagggactgtttttagtatcagttttcggggggtggggggggagacctcacaac 240
           |||||||||||||| |||||||||||||||||| |||||||||       ||||||||||
Sbjct: 243 ttgacacagggactatttttagtatcagttttccgggggtggg-------acctcacaac 191

                                                                       
Query: 241 tagtttatggtacagctgggtagcttgactccagagtgtacactgttactcatgatgcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tagtttatggtacagctgggtagcttgactccagagtgtacactgttactcatgatgcta 131

                                 
Query: 301 ttctgttgctaataacacaatg 322
           ||||||||||||||||||||||
Sbjct: 130 ttctgttgctaataacacaatg 109


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 721
Length adjustment: 9
Effective length of query: 313
Effective length of database: 712
Effective search space:   222856
Effective search space used:   222856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)