BAC Information

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BAC

Clone NameMSMg01-411D09
Chromosome5 (Build37)
Map Location 124,113,580 - 124,114,136
singlet/doubletsinglet
Overlap geneClip1
Upstream geneP2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a
Downstream geneZcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411D09.T7 (MSMg01no411_d09.b1)MSMg01-411D09.TJ (MSMg01no411_d09.g1)
ACCAG508277AG508278
length763762
length of high quality
(start - end)
553 (48 - 600)438 (75 - 512)
definitionCHROMAT_FILE: MSMg01no411_d09.b1 PHD_FILE: MSMg01no411_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:10 2005CHROMAT_FILE: MSMg01no411_d09.g1 PHD_FILE: MSMg01no411_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGGTTTCCACCAGGTGGTGGTGGCGCACGCCTTTAATCCCAG
CACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTACA
GAGTGAGTTCCAGGACAGCCAGAGAACACAGAGAAACCCTGTCTCAAAAA
AAAAAAAAAAAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAGAATTTTTGGTCTCCACTTCCCTTAGATACAA
CTAAACTTTGAACAGGAAATTATAGAAAAATGCTCTTCTGCTCCAAACAA
AACTTTAAAGCTCACACATTCAGTTCAGTACCCCAACCTTACTGTGCACT
CCTTCTAACAGGCAATCACCTAAAACCTGCCTCATAAAAATGAAAGCAAT
CAAAGCACTCAACTGCTTTGGCAGAGGACCCAGGTTTGGGTCCCAGACCC
ACATGGTGGCTCCCAGTGGTTTGTAACTGCGGCTCCTTTCTCCTTACTTC
AGTGGGTATCTGCATGTGTGCAGTATGCATACTCATTGCCAGCTTAAGCA
CATAATCTCTCTTAAAAAAATTAAAGGGAGAATATTCTAAACATGCCGAT
AAGGAAAACATTCTCTTGTAATAACAAGAAAGCAATGGGTGTGGTTAACA
GGGTATTATAAAG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGGAAAGTCAGTTGGATGGCATTT
TGCTGGGGCAAACACGTGAAGGAATGTTTTGTTAAGGTGTGAAAGGCTCA
GGCAGACTCGTGAAGGAACATCTGGCTGAAGCAGACACAGGAGAGAGGAC
GTTCTGCTAAAGCAAGCACATGAAAGGACATGTGATGAAGGATTCTTTGC
TTAGGACACGAATGTATTGGTCTGCCTTACACTGAGTACTTGAGCTGCGT
TTGTCGAGACTCCATATAAACTTCACCAAAAAACTCCTGGTGGTGTGCTG
CAGTTTGTTGCCACTTCTGAGGACTTGGGCTGATTTTATGAACATACTGA
GGTGAGACCTGTGCTGAGAGTAAAACACGTGGAGGACACGAGATGTTTGG
AGGGTATAACTAGGACTCCACAGAGTTACAGAGACAGAGCTTGGCTTGCT
GGTACAGCTAGATGTGTTAGGCTTGTGTGTCTCGAGTCTTCGCTGATCTT
CTCTTCTCTGAGAGAGGCCTATCCCAGCCCTTCTTCTGGGACTTCCGCTT
GGTTCTTCCTGCCGATTCCAGCTGAAGCCGAGGCCCTGCATGCTCTTGTA
TCGCTTCGTCCCCGGCTGCCTCTTCCTCCTCTTCCCCCTTCCCTATCGTG
TGTCCTTTCTTCTATTCCTTTCTTCTGCTCTTTTTCGCTTTCACCTTTCT
TTTCTCTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_d09.b1 MSMg01no411_d09.b1 CHROMAT_FILE:
MSMg01no411_d09.b1 PHD_FILE: MSMg01no411_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:10 2005
         (553 letters)



>mm_chr5_124113384_124114336
          Length = 953

 Score =  739 bits (382), Expect = 0.0
 Identities = 511/564 (90%), Gaps = 22/564 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaggtttccaccaggtggtggtggcgcacgcctttaatcccagcacttgggagg 64
           ||||||||||  ||||||||| || ||||||||||||||||||| |||||| ||||||||
Sbjct: 197 gaattcaaggcctccaccaggcggcggtggcgcacgcctttaataccagcagttgggagg 256

                                                                       
Query: 65  cagaggcaggcggatttctgagtttgaggccagcct-----acagagtgagttccaggac 119
           |||||||||| ||||||||||||| |||||||||||     ||| ||| |||||||||||
Sbjct: 257 cagaggcaggtggatttctgagttcgaggccagcctggtctacaaagtaagttccaggac 316

                                                                       
Query: 120 agccagagaacacagagaaaccctgtctcaaaaaaaaaaaaaaaagaaaagaaagaaaga 179
           ||||||||||||||||||||||||||||||||||||| |      |||| |||||| |||
Sbjct: 317 agccagagaacacagagaaaccctgtctcaaaaaaaaca------gaaa-gaaagagaga 369

                                                                       
Query: 180 aagaaagaaagaaagaaagaaagaaagaaagaaaga---a---ag--a--aagaaagaaa 229
             ||  ||| ||  ||  || |||  ||  ||| ||   |   ||  |  ||||||||||
Sbjct: 370 gggagggaaggagggagggagagagggagggaaggagggagggagggaggaagaaagaaa 429

                                                                       
Query: 230 gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagagaatttttggtctccact 289
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 430 gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagagaattcaaggtctccact 489

                                                                       
Query: 290 tcccttagatacaactaaactttgaacaggaaattatagaaaaatgctcttctgctccaa 349
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 490 tcccttagatacaactaaactttgaacaggaaattatagaaaaatgttcttctgctccaa 549

                                                                       
Query: 350 acaaaactttaaagctcacacattcagttcagtaccccaaccttactgtgcactccttct 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 acaaaactttaaagctcacacattcagttcagtaccccaaccttactgtgcactccttct 609

                                                                       
Query: 410 aacaggcaatcacctaaaacctgcctcataaaaatgaaagcaatcaaagcactcaactgc 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aacaggcaatcacctaaaacctgcctcataaaaatgaaagcaatcaaagcactcaactgc 669

                                                                       
Query: 470 tttggcagaggacccaggtttgggtcccagacccacatggtggctcccagtggtttgtaa 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tttggcagaggacccaggtttgggtcccagacccacatggtggctcccagtggtttgtaa 729

                                   
Query: 530 ctgcggctcctttctccttacttc 553
           ||||||||||||||||||||||||
Sbjct: 730 ctgcggctcctttctccttacttc 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 116
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)