Query= MSMg01no411_f03.b1 MSMg01no411_f03.b1 CHROMAT_FILE:
MSMg01no411_f03.b1 PHD_FILE: MSMg01no411_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:19 2005
(589 letters)
>mm_chr5_133286777_133287766
Length = 990
Score = 1011 bits (523), Expect = 0.0
Identities = 574/597 (96%), Gaps = 11/597 (1%)
Strand = Plus / Minus
Query: 4 ggaattcattgttttcttcttttatcctgctggcccttacttctttttctataatcttaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ggaattcattgttttcttcttttatcctgctggcccttacttctttttctataatcttaa 650
Query: 64 ggacactagcttcagcacatctcacctgttcatatgacccacagctctccccagagaaca 123
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 649 ggacactagcttcagcacatctcacctgttcatatgacccacagctctctccagagaaca 590
Query: 124 ggatgcctttggacacagaggactatatctcccagagtctcctaagagcatttatcctgg 183
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 589 ggatgcctttggacacagaagactacgtctcccagagtctcctaagagcatttatcctgg 530
Query: 184 aatatatttaaacacaattcctaatgttaccatgataatttacattcaatgtggaaccag 243
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aatatatttaaacacaactcctaatgttaccatgataatttacattcaatgtggaaccag 470
Query: 244 aaggtttacaagtctctttcttgtgaaatttaatttcacaaacaaactgtcaaggaaaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 469 aaggtttacaagtctctttcttgtgaaatttaatttcacaaacaaactgtcaagggaaaa 410
Query: 304 acattaaaattctcctttatg-aaaaagaatcatgaattttaattctcagagcccccatc 362
||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct: 409 acattaaaattctcctttatgaaaaaaaaaacatgaattttaattctcagagcccccatc 350
Query: 363 cacacccaagacacttggcccagaaaatgacatgaaaacactcttcattggaaccctctg 422
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cacacccaagacatttggcccagaaaatgacatgaaaacactcttcattggaaccctctg 290
Query: 423 aaacatggataatatgatcccaggatgctaaaagccttcctttttattaggtgcaaggag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aaacatggataatatgatcccaggatgctaaaagccttcctttttattaggtgcaaggag 230
Query: 483 ggagctacacccttggtcctgaggt----------acctctgtgatcgctcaatatgatg 532
||||||||||||||||||| ||||| |||||||||||| ||||||||||||
Sbjct: 229 ggagctacacccttggtcccgaggtagcatgagtgacctctgtgatcactcaatatgatg 170
Query: 533 cttagtttggtcaactggactgtcttagctagttttttattgctatgataaaacacc 589
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 169 cttagtttggtcaactggactgtcttagctagttttttattgctgtgataaaacacc 113
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 990
Length adjustment: 10
Effective length of query: 579
Effective length of database: 980
Effective search space: 567420
Effective search space used: 567420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_f03.g1 MSMg01no411_f03.g1 CHROMAT_FILE:
MSMg01no411_f03.g1 PHD_FILE: MSMg01no411_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:19 2005
(395 letters)
>mm_chr5_133139179_133139971
Length = 793
Score = 538 bits (278), Expect = e-157
Identities = 377/448 (84%), Gaps = 63/448 (14%)
Strand = Plus / Plus
Query: 1 gcctgggctggctgtaatagtaggaccttgactccaaaaagtatccccctgtcccggcac 60
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 156 gcctgggctggctgtaatagtaggaccttgactccaaaatgtagccccctgtcccggcac 215
Query: 61 acacggg--------------------------------catacacacacacacgcacac 88
||||||| || ||||||||||||||||||
Sbjct: 216 acacgggcacacaaacacacacacacacacacacacacacacacacacacacacgcacac 275
Query: 89 gta---------------agcatgcacacaaacctttgccttcccctttctttttctctg 133
| |||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 276 --acacacacacacacacagcatgcacacaaacctttgccctcccctttctttctctctg 333
Query: 134 caggctgtgacaggaaggtgggtggggctgaggatccagtcacatggtctcatcctagga 193
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 334 caggctgtgacaggaaggtgggtggggctgaggatccagtcacatggtctcattctagga 393
Query: 194 ttgaggcttgattacaggtgcaaggcacggagaatccttaggttggtgactctctgggtg 253
||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 394 ttgaggcttgattacaggtgcaaggcatggaggatc-ttaggttggtgactctctgggtg 452
Query: 254 acgccaggcaatggaatccagagcaaaagtgggaggcagggtgcagggtgcagggtgaag 313
|||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 453 acgccaggcaatggaatccagagcaaaagtgggaggcagggtgcagggtg-------aag 505
Query: 314 tgagggtaaagaggaggttccaggagaacgtcacaagcccaga------tatgggtaaag 367
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 506 tgagggtaaagaggaggttccaggagaacgtcacaagcccagaaggtgatatgggtaaag 565
Query: 368 acagctgagcaggagtgtggcatggcct 395
||||||||||||||||||||||||||||
Sbjct: 566 acagctgagcaggagtgtggcatggcct 593
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 793
Length adjustment: 9
Effective length of query: 386
Effective length of database: 784
Effective search space: 302624
Effective search space used: 302624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
