Query= MSMg01no412_p04.b1 MSMg01no412_p04.b1 CHROMAT_FILE:
MSMg01no412_p04.b1 PHD_FILE: MSMg01no412_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:29 2005
(672 letters)
>mm_chr5_55939053_55940125
Length = 1073
Score = 1203 bits (622), Expect = 0.0
Identities = 649/658 (98%), Gaps = 3/658 (0%)
Strand = Plus / Minus
Query: 17 gaattccattcttttttttaaactgaggtttcttgccctaaaacttaatgacccaattta 76
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 gaattccattc-tttttttaaactgaggtttcttgccctaaaacttaatgacccaattta 815
Query: 77 ttcgttggaatagctgatcatctatgggttgcctgttcctttataggcctgattttgaca 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 ttcgttggaatagctgatcatctatgggttgcctgttcctttataggcctgattttgaca 755
Query: 137 ttgtttatataggatctttttgtcattaaacttcagagagcattaagcaacactcatgat 196
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 754 ttgtttatataggatctttttgtcattaaacttcagagagcattaagcaacactgatgat 695
Query: 197 tggaagtagtctgtagttatgcctcaatatactgtttgtaagcaacatttttaatgagaa 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tggaagtagtctgtagttatgcctcaatatactgtttgtaagcaacatttttaatgagaa 635
Query: 257 atatttgagatagaaagaatgacaagaatattctctgagaagaaaaatgaaatgaattat 316
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 634 atatttgagatagaaagaatgacaagaagattctctgagaagaaaaatgaaatgaattat 575
Query: 317 acaggaaaagactcagaaagaaggtcttgagctaagaaagtataaccacaagtgtcctga 376
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 574 acaggaaaagactcagaaagaaggtcttgagctaagaaagtataaccacgagtgtcctga 515
Query: 377 gtaattcttcatgtcattcttacttaatgatttaatgttttagtagtagtttaaatatat 436
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gtaattcttcaagtcattcttacttaatgatttaatgttttagtagtagtttaaatatat 455
Query: 437 tataaaggggctttagttatggaatttatgctatgttttgcttattaaactttaaataaa 496
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tataaaggggctttacttatggaatttatgctatgttttgcttattaaactttaaataaa 395
Query: 497 aagctacattgaatacattcataaat-aaaatatagacaacaaagttgttatagaaaaca 555
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 394 aagctacattgaatacattcataaattaaaaaatagacaacaaagttgttatagaaaaca 335
Query: 556 cccaacaaatcatgttttaaattagctgaaaaaaat-gcatagtttgtattttaatttga 614
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 334 cccaacaaatcatgttttaaattagctgaaaaaaattgcatagtttgtattttaatttga 275
Query: 615 tctagacatacagatttaacttatgctgaattcagtttcctctggcaaattgacttat 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tctagacatacagatttaacttatgctgaattcagtttcctctggcaaattgacttat 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1073
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1063
Effective search space: 703706
Effective search space used: 703706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_p04.g1 MSMg01no412_p04.g1 CHROMAT_FILE:
MSMg01no412_p04.g1 PHD_FILE: MSMg01no412_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:29 2005
(248 letters)
>mm_chr5_55790524_55791171
Length = 648
Score = 391 bits (202), Expect = e-113
Identities = 235/248 (94%), Gaps = 4/248 (1%)
Strand = Plus / Plus
Query: 1 agtagtaatatgagtagctggtattggactgtggatagttgtgcgctgtccatgtctcct 60
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 201 agtagtaatatgagtagctggtactggactgtggataggtgtgcgctgtccatgtctcct 260
Query: 61 tcagtgtgccacttccccatagagactctggtgctcacttacaataaaagaaacactttc 120
||| |||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaatgtgccacttccccttatagtctctggtgctcacttacaataaaagaaacactttc 320
Query: 121 ccccaaactgtctctggagtggtttatctctggccccttactgaccacctgcattactgc 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaaaactgtctctggagtggtttatctctggccccttactgaccacctgcattactgc 380
Query: 181 ctttcatgggacactttaataacaaaag----tgtgtgtgtgtgtgtgtgtgtgtgtgtg 236
||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||
Sbjct: 381 ctttcatgggacactttgataacaaaagcaagtgtgtgtgtgtgtgtgtgtatgtgtgtg 440
Query: 237 tgtgtgtg 244
||||||||
Sbjct: 441 tgtgtgtg 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
