BAC Information

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BAC

Clone NameMSMg01-413D02
Chromosome5 (Build37)
Map Location 115,470,447 - 115,610,395
singlet/doubletdoublet
Overlap geneSppl3, Acads, AA407659, 2410014A08Rik
Upstream geneDao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1
Downstream geneCabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413D02.T7 (MSMg01no413_d02.b1)MSMg01-413D02.TJ (MSMg01no413_d02.g1)
ACCAG509784AG509785
length732745
length of high quality
(start - end)		569 (37 - 605)396 (66 - 461)
definitionCHROMAT_FILE: MSMg01no413_d02.b1 PHD_FILE: MSMg01no413_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:48 2005CHROMAT_FILE: MSMg01no413_d02.g1 PHD_FILE: MSMg01no413_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,470,447 - 115,471,012)(115,610,024 - 115,610,395)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTC
TGTAGATCAGGCTGGCCTCGAACTCAGCAATCTGCCTGCCTGGTCTCCTA
AGTGCAGGGATTGAAGATGTGTAGCTGATGCTCAGATTTTTAAAAAGTAT
TTTAGAGATTTATAATTTTCTAGACAGTGGATTTTAGAGTATGTTCCTCA
GAATCTGATGTCAGAGCACATAGGCATGAGGAATGAATAGTTACACGATG
CTGTTGTCTGAAGCAAACGCAGAAGAAGAGGCAGTGCTGTTGGCCTGACC
ACGCTCATCACAGGTCTTTTCTTCCTGCTGTCCAGGTAGCAACAGAGGAC
CGCAGTGCTTTTGTTCCTCCTCTGCAACTGGACCTGCATTGTCCACTCTC
CCCTTCCCCGCTTGGGTTCCTCTTGAGCTTCTGATCCGTACACCTCCAAT
GAGCTAGGCAAACACCAACTGAGGTACATCCCCAGCCCATGTACTTATCA
AATTCCTTAGGTTTTTTTATTTTTTAATTTTTTAACGTGAATGAGTGTTT
TGACTATGTGCATGTAAATGTACTACATGAATTTCTGGTGCCTGTGGAGA
CCAGAAGAGGTTGCTGGATTCCCCTGGATGCAAGAGAAGCAAGCCTTTTT
TTTTTTTCTTCCTTCCTTTTTTCCTATTATTTAGCTCTGGCTGCCCTGGA
ACTCCCTATGGATACCACATAGAGATCCTTGN

TGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTTTACCGGGGTAACATAAGAGACACCGTTCATTT
GCATCAAATATGGCCTCACTCACAGGTAGCCAGCCTCACAGCATACGTGG
GCTGGAAGCTGAATACTGTTGTGTGGTTCTATACAGGTTACTTCACCTTC
TTCAACTTTTTAAGTTTCTCATCCATAAAACGGGGGGAACATTTCCTGTT
TTTTAGCTTTCTGAGGTGGATATGAGATTCAAATGTGTGGGAACGGATGG
CTGTGGAGAACCTGCTGTCAGGGCCCTGTCTTGGCTACAGTCCTAAGCTT
GGCTTTTGGATGGCTTCTTCTTCTTTTTTTTTTTCCAAGTTCTCTTCCGT
GTTACCTGCATTTTTCCATAACAAGCATATTGTTTTCGCTGGGCAAGGTA
GCACCAGCCTGCTGTTTTAGTTACTCGGAAAGCTGAGGCAGGAGGATCAC
AAATTTGAGGCCAGTCTGGACTACTTATCAAGAGACGTCTAAGTCTGTTA
ATGCTCCTCCAGGTTATGAAGGAACCGTGCTCATTTCATCCCTGGTTTCC
CAGAGGAAATAAGTGCAGTGTTTTGGTATTATAATTTTCTGAGTTTAGCC
CTGGCTGTTTTCCGTCATTTTATCTTCCCCGCTCCACTTGACATTTTTTT
TCTTTTATTCACTCTTTTATTATTTCCTTCATCCCTCCCCTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_d02.b1 MSMg01no413_d02.b1 CHROMAT_FILE:
MSMg01no413_d02.b1 PHD_FILE: MSMg01no413_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:48 2005
         (569 letters)



>mm_chr5_115470244_115471212
          Length = 969

 Score = 1071 bits (554), Expect = 0.0
 Identities = 563/566 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactctgtagatcaggctggcctcgaactcagcaatctgcctgcctggtctcct 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactctgtagaccaggctggcctcgaactcagcaatctgcctgcctggtctcct 263

                                                                       
Query: 64  aagtgcagggattgaagatgtgtagctgatgctcagatttttaaaaagtattttagagat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagtgcagggattgaagatgtgtagctgatgctcagatttttaaaaagtattttagagat 323

                                                                       
Query: 124 ttataattttctagacagtggattttagagtatgttcctcagaatctgatgtcagagcac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttataattttctagacagtggattttagagtatgttcctcagaatctgatgtcagagcac 383

                                                                       
Query: 184 ataggcatgaggaatgaatagttacacgatgctgttgtctgaagcaaacgcagaagaaga 243
           |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 384 ataggcatgaggaatgaatagttacatgatgctgttgtctgtagcaaacgcagaagaaga 443

                                                                       
Query: 244 ggcagtgctgttggcctgaccacgctcatcacaggtcttttcttcctgctgtccaggtag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggcagtgctgttggcctgaccacgctcatcacaggtcttttcttcctgctgtccaggtag 503

                                                                       
Query: 304 caacagaggaccgcagtgcttttgttcctcctctgcaactggacctgcattgtccactct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caacagaggaccgcagtgcttttgttcctcctctgcaactggacctgcattgtccactct 563

                                                                       
Query: 364 ccccttccccgcttgggttcctcttgagcttctgatccgtacacctccaatgagctaggc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccccttccccgcttgggttcctcttgagcttctgatccgtacacctccaatgagctaggc 623

                                                                       
Query: 424 aaacaccaactgaggtacatccccagcccatgtacttatcaaattccttaggttttttta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaacaccaactgaggtacatccccagcccatgtacttatcaaattccttaggttttttta 683

                                                                       
Query: 484 ttttttaattttttaacgtgaatgagtgttttgactatgtgcatgtaaatgtactacatg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttttttaattttttaacgtgaatgagtgttttgactatgtgcatgtaaatgtactacatg 743

                                     
Query: 544 aatttctggtgcctgtggagaccaga 569
           ||||||||||||||||||||||||||
Sbjct: 744 aatttctggtgcctgtggagaccaga 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no413_d02.g1 MSMg01no413_d02.g1 CHROMAT_FILE:
MSMg01no413_d02.g1 PHD_FILE: MSMg01no413_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:48 2005
         (396 letters)



>mm_chr5_115609600_115610395
          Length = 796

 Score =  704 bits (364), Expect = 0.0
 Identities = 370/372 (99%)
 Strand = Plus / Minus

                                                                       
Query: 25  accgttcatttgcatcaaatatggcctcactcacaggtagccagcctcacagcatacgtg 84
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 accgttcatttgcatcaaatatggcctcactcacaggtagccagcctcacagcatacgtg 737

                                                                       
Query: 85  ggctggaagctgaatactgttgtgtggttctatacaggttacttcaccttcttcaacttt 144
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 736 ggctggaagctgaatactgttgtgtggttctatacaggttacttcaccatcttcaacttt 677

                                                                       
Query: 145 ttaagtttctcatccataaaacggggggaacatttcctgttttttagctttctgaggtgg 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttaagtttctcatccataaaacggggggaacatttcctgttttttagctttctgaggtgg 617

                                                                       
Query: 205 atatgagattcaaatgtgtgggaacggatggctgtggagaacctgctgtcagggccctgt 264
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 atatgagattcaagtgtgtgggaacggatggctgtggagaacctgctgtcagggccctgt 557

                                                                       
Query: 265 cttggctacagtcctaagcttggcttttggatggcttcttcttctttttttttttccaag 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cttggctacagtcctaagcttggcttttggatggcttcttcttctttttttttttccaag 497

                                                                       
Query: 325 ttctcttccgtgttacctgcatttttccataacaagcatattgttttcgctgggcaaggt 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttctcttccgtgttacctgcatttttccataacaagcatattgttttcgctgggcaaggt 437

                       
Query: 385 agcaccagcctg 396
           ||||||||||||
Sbjct: 436 agcaccagcctg 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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