BAC Information

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BAC

Clone NameMSMg01-413M10
Chromosome5 (Build37)
Map Location 81,943,235 - 82,049,112
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413M10.T7 (MSMg01no413_m10.b1)MSMg01-413M10.TJ (MSMg01no413_m10.g1)
ACCAG510229AG510230
length726747
length of high quality
(start - end)
564 (64 - 627)514 (67 - 580)
definitionCHROMAT_FILE: MSMg01no413_m10.b1 PHD_FILE: MSMg01no413_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:34 2005CHROMAT_FILE: MSMg01no413_m10.g1 PHD_FILE: MSMg01no413_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,943,235 - 81,943,798)(82,048,672 - 82,049,112)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAT
GATTCTCGCATTCCACTCTCTAACTTACCTCATTAGACACACATAATTCA
TACAGAACTACATTCATTACGTCCAATAAACATGCCTCACTCAGCCTTTT
ATTATGTATATATCTGATCATTATTTCTTTTCAGACATTAATTTAATATA
TTGTGTACATAGAAATAAGGCTCAATGGGCTTTTGTTGAATAGACAAATG
AATAGTGGCTTTCTACCTCTTCCTCAAAGCAAATGATGAATTTGGTACCA
TTTTCTCAAATCTTTATGAAGCTCAGCTAGCGTGATGTCATGTCTTTCCA
AAATTAGTCGTGCTGATATTATGTTGAATTAACTTTTGCTACAAAAGAGA
AGGCCAAGTCTGCAGTGTCTCTAGTAACAGGTTCTAGCATCACTTTAAAG
AGTAAATGCAAACTCTCCTAGACTACATTACTAGCTGCAGCATGCACTGG
CAAGGCTCTCACACTTGGTGCATGTCTCCAGTGAGAACCCAATCACATAC
AGTAATTTACAGAATTGTGTGGAGTCCGTATATCATTTCTACGATCTTCT
TANATGAAAAACTGTATTGTTGCTGTGAAAGCACTGCTTATGGATAATGC
ATCCTTTTTTCTTACTCCACTGAGGCATGAAGTAACTTCTAGTGAAAATC
AATCACAACATACCAACTATACCCAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTGAGAATTAGAAGGGTGGGAAGCCTGAGGAAAG
CACCAGACTCACAGTGAAAGTCCTGGTCAGCAAAGGATTTTGGTTTTCTA
GGATCCTTAAGAATTGCACAATTTAATTATGAGCAAATAAAGGAAAACCA
TACACATACTGTTGCAAAATTATTATTCATTACAATCCATTACATATTTG
GAAACATTTTGAATATTCAGACTACTGGATTAATTGGATCTTTTGTAATA
AATCAGGATTAAATTATATTATTAAAATTTGAAATCAGGCTTATAAAATA
AGTGACAACATATACAGAATGGGGGGAAAATGAAATCATTTTCTCCTGTT
CCTGTTTAATAGATAATATCTTAATGAAAAAGCAGAAGAGAAATTTTTGT
GTTTATATAAGATGATGGGCATCTACTGAGCATCACTCTGAAAAACAGCA
TCAATAATTGTGAGCATGACTAAAGGTGTGGATCCGACAATAGGATTAAC
ATGTCTAGATTTTCATGATACTTATCCCACATAGTGTGATGTTGGTTGTT
TTAATCCTCTAAATTTTTACCCCAAACTCTTTAACTTGGAAATAAATAAA
CTTGATTTTAGAGAAAGGCCCTTTATAGAAAAATTATAATGACCATTAAT
TGCCCTTGTGATATCAGCATTTGACTATGGATTTAATTTTACCGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_m10.b1 MSMg01no413_m10.b1 CHROMAT_FILE:
MSMg01no413_m10.b1 PHD_FILE: MSMg01no413_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:34 2005
         (564 letters)



>mm_chr5_81943035_81943998
          Length = 964

 Score = 1038 bits (537), Expect = 0.0
 Identities = 557/564 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactctctaacttacctcattagacacacataattcatacagaactacattcattacgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactctctaacttacctcattagacacacataattcatacagaactacattcattacgtc 260

                                                                       
Query: 61  caataaacatgcctcactcagccttttattatgtatatatctgatcattatttcttttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caataaacatgcctcactcagccttttattatgtatatatctgatcattatttcttttca 320

                                                                       
Query: 121 gacattaatttaatatattgtgtacatagaaataaggctcaatgggcttttgttgaatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacattaatttaatatattgtgtacatagaaataaggctcaatgggcttttgttgaatag 380

                                                                       
Query: 181 acaaatgaatagtggctttctacctcttcctcaaagcaaatgatgaatttggtaccattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaaatgaatagtggctttctacctcttcctcaaagcaaatgatgaatttggtaccattt 440

                                                                       
Query: 241 tctcaaatctttatgaagctcagctagcgtgatgtcatgtctttccaaaattagtcgtgc 300
           ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 tctcaaatctttaggaagctcagctagcgtgatgtcatgtctttccagaattagtcgtgc 500

                                                                       
Query: 301 tgatattatgttgaattaacttttgctacaaaagagaaggccaagtctgcagtgtctcta 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 ttatattatgttgaattaacttttgctacaaaagagaaggccaagtctgcagtgtgtcta 560

                                                                       
Query: 361 gtaacaggttctagcatcactttaaagagtaaatgcaaactctcctagactacattacta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaacaggttctagcatcactttaaagagtaaatgcaaactctcctagactacattacta 620

                                                                       
Query: 421 gctgcagcatgcactggcaaggctctcacacttggtgcatgtctccagtgagaacccaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctgcagcatgcactggcaaggctctcacacttggtgcatgtctccagtgagaacccaat 680

                                                                       
Query: 481 cacatacagtaatttacagaattgtgtggagtccgtatatcatttctacgatcttcttan 540
           |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 681 cacacacagtaatttagagaattgtgtggagtccgtatatcatttctacgatcttcttaa 740

                                   
Query: 541 atgaaaaactgtattgttgctgtg 564
           ||||||||||||||||||||||||
Sbjct: 741 atgaaaaactgtattgttgctgtg 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no413_m10.g1 MSMg01no413_m10.g1 CHROMAT_FILE:
MSMg01no413_m10.g1 PHD_FILE: MSMg01no413_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:34 2005
         (514 letters)



>mm_chr5_82048208_82049120
          Length = 913

 Score =  762 bits (394), Expect = 0.0
 Identities = 430/442 (97%), Gaps = 1/442 (0%)
 Strand = Plus / Minus

                                                                       
Query: 73  tttggttttctaggatccttaagaattgcacaatttaattatgagcaaataaaggaaaac 132
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 905 tttggttttctaggatccttaagaattgcacaatctacttatgagcaaataaaggaaaac 846

                                                                       
Query: 133 catacacatactgttgcaaaattattattcattacaatccattacatatttggaaacatt 192
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 845 catacacatactgttgcaaaattattattcattacagtccattacatatttggaaacatt 786

                                                                       
Query: 193 ttgaatattcagactactggattaattggatcttttgtaataaatcaggattaaattata 252
           ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||  |||
Sbjct: 785 ttgaatattcaaacgactggattaattggatcttttgtaataaatcaggactaaaaaata 726

                                                                       
Query: 253 ttattaaaatttgaaatcaggcttataaaataagtgacaacatatacagaatggggggaa 312
           |||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| ||
Sbjct: 725 ttattaaaatttgaaatcagacttataaaatatgtgacaacatatacagaat-ggggaaa 667

                                                                       
Query: 313 aatgaaatcattttctcctgttcctgtttaatagataatatcttaatgaaaaagcagaag 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aatgaaatcattttctcctgttcctgtttaatagataatatcttaatgaaaaagcagaag 607

                                                                       
Query: 373 agaaatttttgtgtttatataagatgatgggcatctactgagcatcactctgaaaaacag 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 agaaatttttgtgtttatataagatgatgggcatctactgagcatcactctgaaaaacag 547

                                                                       
Query: 433 catcaataattgtgagcatgactaaaggtgtggatccgacaataggattaacatgtctag 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 catcaataattgtgagcatgactaaaggtgtggatccgacaataggattaacatgtctag 487

                                 
Query: 493 attttcatgatacttatcccac 514
           ||||||||||||||||||||||
Sbjct: 486 attttcatgatacttatcccac 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 913
Length adjustment: 10
Effective length of query: 504
Effective length of database: 903
Effective search space:   455112
Effective search space used:   455112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)