Query= MSMg01no413_m10.b1 MSMg01no413_m10.b1 CHROMAT_FILE:
MSMg01no413_m10.b1 PHD_FILE: MSMg01no413_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:34 2005
(564 letters)
>mm_chr5_81943035_81943998
Length = 964
Score = 1038 bits (537), Expect = 0.0
Identities = 557/564 (98%)
Strand = Plus / Plus
Query: 1 cactctctaacttacctcattagacacacataattcatacagaactacattcattacgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactctctaacttacctcattagacacacataattcatacagaactacattcattacgtc 260
Query: 61 caataaacatgcctcactcagccttttattatgtatatatctgatcattatttcttttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caataaacatgcctcactcagccttttattatgtatatatctgatcattatttcttttca 320
Query: 121 gacattaatttaatatattgtgtacatagaaataaggctcaatgggcttttgttgaatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacattaatttaatatattgtgtacatagaaataaggctcaatgggcttttgttgaatag 380
Query: 181 acaaatgaatagtggctttctacctcttcctcaaagcaaatgatgaatttggtaccattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaaatgaatagtggctttctacctcttcctcaaagcaaatgatgaatttggtaccattt 440
Query: 241 tctcaaatctttatgaagctcagctagcgtgatgtcatgtctttccaaaattagtcgtgc 300
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 tctcaaatctttaggaagctcagctagcgtgatgtcatgtctttccagaattagtcgtgc 500
Query: 301 tgatattatgttgaattaacttttgctacaaaagagaaggccaagtctgcagtgtctcta 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 ttatattatgttgaattaacttttgctacaaaagagaaggccaagtctgcagtgtgtcta 560
Query: 361 gtaacaggttctagcatcactttaaagagtaaatgcaaactctcctagactacattacta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaacaggttctagcatcactttaaagagtaaatgcaaactctcctagactacattacta 620
Query: 421 gctgcagcatgcactggcaaggctctcacacttggtgcatgtctccagtgagaacccaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctgcagcatgcactggcaaggctctcacacttggtgcatgtctccagtgagaacccaat 680
Query: 481 cacatacagtaatttacagaattgtgtggagtccgtatatcatttctacgatcttcttan 540
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacacacagtaatttagagaattgtgtggagtccgtatatcatttctacgatcttcttaa 740
Query: 541 atgaaaaactgtattgttgctgtg 564
||||||||||||||||||||||||
Sbjct: 741 atgaaaaactgtattgttgctgtg 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_m10.g1 MSMg01no413_m10.g1 CHROMAT_FILE:
MSMg01no413_m10.g1 PHD_FILE: MSMg01no413_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:34 2005
(514 letters)
>mm_chr5_82048208_82049120
Length = 913
Score = 762 bits (394), Expect = 0.0
Identities = 430/442 (97%), Gaps = 1/442 (0%)
Strand = Plus / Minus
Query: 73 tttggttttctaggatccttaagaattgcacaatttaattatgagcaaataaaggaaaac 132
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 905 tttggttttctaggatccttaagaattgcacaatctacttatgagcaaataaaggaaaac 846
Query: 133 catacacatactgttgcaaaattattattcattacaatccattacatatttggaaacatt 192
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 845 catacacatactgttgcaaaattattattcattacagtccattacatatttggaaacatt 786
Query: 193 ttgaatattcagactactggattaattggatcttttgtaataaatcaggattaaattata 252
||||||||||| || ||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 785 ttgaatattcaaacgactggattaattggatcttttgtaataaatcaggactaaaaaata 726
Query: 253 ttattaaaatttgaaatcaggcttataaaataagtgacaacatatacagaatggggggaa 312
|||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| ||
Sbjct: 725 ttattaaaatttgaaatcagacttataaaatatgtgacaacatatacagaat-ggggaaa 667
Query: 313 aatgaaatcattttctcctgttcctgtttaatagataatatcttaatgaaaaagcagaag 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aatgaaatcattttctcctgttcctgtttaatagataatatcttaatgaaaaagcagaag 607
Query: 373 agaaatttttgtgtttatataagatgatgggcatctactgagcatcactctgaaaaacag 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 agaaatttttgtgtttatataagatgatgggcatctactgagcatcactctgaaaaacag 547
Query: 433 catcaataattgtgagcatgactaaaggtgtggatccgacaataggattaacatgtctag 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 catcaataattgtgagcatgactaaaggtgtggatccgacaataggattaacatgtctag 487
Query: 493 attttcatgatacttatcccac 514
||||||||||||||||||||||
Sbjct: 486 attttcatgatacttatcccac 465
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 913
Length adjustment: 10
Effective length of query: 504
Effective length of database: 903
Effective search space: 455112
Effective search space used: 455112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|