BAC Information

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BAC

Clone NameMSMg01-413P01
Chromosome5 (Build37)
Map Location 30,101,327 - 30,262,084
singlet/doubletdoublet
Overlap geneDnajb6, EG433865, LOC100039405, LOC100034662
Upstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993
Downstream geneLOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413P01.T7 (MSMg01no413_p01.b1)MSMg01-413P01.TJ (MSMg01no413_p01.g1)
ACCAG510353AG510354
length737748
length of high quality
(start - end)		493 (54 - 546)436 (69 - 504)
definitionCHROMAT_FILE: MSMg01no413_p01.b1 PHD_FILE: MSMg01no413_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:47 2005CHROMAT_FILE: MSMg01no413_p01.g1 PHD_FILE: MSMg01no413_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,261,596 - 30,262,084)(30,101,327 - 30,101,762)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTCTGCCCTGGAATCCCCTCACCTTCTCCTCTCAGCTCTACAGTATT
CCCATGAATCCCTGTGAAACGGCTGCTCTGTAATGAGCAGTGCTAAGAGG
CTCCATCAGCACCTGGCTTGAGCAGACTCTTGAACATGGTTTTGCTGTTG
GCTGATAATTATTATGTATGCCATATTTTTCTGGTACTTGGTACTCTACC
ACATCCTGGCATGGAATGTGATAGCTACTTTGTATGGGTTTTGCTTTTCT
CTACAACTACATTTGTTCCAAAGGATTTTCAGACTTGATTTTATTTACAA
TTGGCAGTCAATTAGAATCACCAGCCAAAACTCTGTACATGCTGTTATTT
GTACACACAAAGATACTAGTGAGCTGTGACACCTGGAGGGTTCATAAATC
CTCTCTCATTGTACCTGGAGTCCCCAGCGTTCTCCTAATCACAGATTTCC
TGTTCCTTATGCATTTCTGCCTTTGTTCTCATATAGCCTTTGTGTGTGTC
CTTGTTCTCACTTCCTCTGAAAGGACTCTTGCCAAGGACAAAGAAAAGCC
ACTGTCCCTTGAATTCTCCATTATTCCTCAGATTCCAGGAAATTCGACAG
ACATCCTCTTGTGCCATGGCTTTATTGATAGCCATAACCGGATGTGGGCT
TTTCTGACCTTCACCCAAGACTAATCTTGCAATCGTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGACCCTACTCTCATGAGTAAGTAGATAAAA
ACAAACCATAAGTATATAAAAATCATGCTAGCGGATGGGCCAGCCAAAAT
TGTGCCTTTTTTGTTCTGTTTTTGGTTTTTTTAGAGACAGGGTTTTTCTG
TATATATAGCTCTGGTTGTCCTGGAATTCACTTGTAGACCAGGCTAGCTT
CAGACTCAAGGGATCCACCTGCCTCTGCCTCCTGAGTGCTGGTATTAAAG
TCGTGTGCCACTACCACCTGACTACTAAATTTTTTAAATGGATTTATGTT
TGTGTGTGCATGTATTTCTGTGCACCATGTGCTCATGAAAGCCAAAACAG
GGCAGATATGGACACTAGGAATCTCACCTCTGTCTCCCAGAAGAGCAGCC
AGTGCAGGCCCCCTGGTAACATCCTGTCCAGAAAGACTGTGTTCCTGACT
CTCAGATAGCTTCCCTAGTTTTGAAGGATTGCTAGGTGGACCTGTCCTTT
GTGTCAGCTGCAAAAAATATGATCTTTCGTACTTTTCCAAAAAAGGCTTT
TTTTCACCCCCCCTTATATTTGTTTAAAGCCGAATTGTCATTCTGTTCTT
CCCCTTGATTCATGTTTCCTCATTTTCCGCCTTTCTCCTACATCTGTTCC
TTTTGACTTTGGATTTATAATACTCCCCCTCTTTTTTTTTCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_p01.b1 MSMg01no413_p01.b1 CHROMAT_FILE:
MSMg01no413_p01.b1 PHD_FILE: MSMg01no413_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:47 2005
         (493 letters)



>mm_chr5_30261392_30262284
          Length = 893

 Score =  938 bits (485), Expect = 0.0
 Identities = 488/489 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gccctggaatcccctcaccttctcctctcagctctacagtattcccatgaatccctgtga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gccctggaatcccctcaccttctcctctcagctctacagtattcccatgaatccctgtga 634

                                                                       
Query: 65  aacggctgctctgtaatgagcagtgctaagaggctccatcagcacctggcttgagcagac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aacggctgctctgtaatgagcagtgctaagaggctccatcagcacctggcttgagcagac 574

                                                                       
Query: 125 tcttgaacatggttttgctgttggctgataattattatgtatgccatatttttctggtac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tcttgaacatggttttgctgttggctgataattattatgtatgccatatttttctggtac 514

                                                                       
Query: 185 ttggtactctaccacatcctggcatggaatgtgatagctactttgtatgggttttgcttt 244
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttggtactccaccacatcctggcatggaatgtgatagctactttgtatgggttttgcttt 454

                                                                       
Query: 245 tctctacaactacatttgttccaaaggattttcagacttgattttatttacaattggcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tctctacaactacatttgttccaaaggattttcagacttgattttatttacaattggcag 394

                                                                       
Query: 305 tcaattagaatcaccagccaaaactctgtacatgctgttatttgtacacacaaagatact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tcaattagaatcaccagccaaaactctgtacatgctgttatttgtacacacaaagatact 334

                                                                       
Query: 365 agtgagctgtgacacctggagggttcataaatcctctctcattgtacctggagtccccag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agtgagctgtgacacctggagggttcataaatcctctctcattgtacctggagtccccag 274

                                                                       
Query: 425 cgttctcctaatcacagatttcctgttccttatgcatttctgcctttgttctcatatagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cgttctcctaatcacagatttcctgttccttatgcatttctgcctttgttctcatatagc 214

                    
Query: 485 ctttgtgtg 493
           |||||||||
Sbjct: 213 ctttgtgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no413_p01.g1 MSMg01no413_p01.g1 CHROMAT_FILE:
MSMg01no413_p01.g1 PHD_FILE: MSMg01no413_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:47 2005
         (436 letters)



>mm_chr5_30101127_30101962
          Length = 836

 Score =  820 bits (424), Expect = 0.0
 Identities = 433/436 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaccctactctcatgagtaagtagataaaaacaaaccataagtatataaaaatcatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaccctactctcatgagtaagtagataaaaacaaaccataagtatataaaaatcatgc 260

                                                                       
Query: 61  tagcggatgggccagccaaaattgtgccttttttgttctgtttttggtttttttagagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcggatgggccagccaaaattgtgccttttttgttctgtttttggtttttttagagac 320

                                                                       
Query: 121 agggtttttctgtatatatagctctggttgtcctggaattcacttgtagaccaggctagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggtttttctgtatatatagctctggttgtcctggaattcacttgtagaccaggctagc 380

                                                                       
Query: 181 ttcagactcaagggatccacctgcctctgcctcctgagtgctggtattaaagtcgtgtgc 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 ttcagactcaagggatccacctgcctctgcctcctgagtgctggaattaaagtcgtgtgc 440

                                                                       
Query: 241 cactaccacctgactactaaattttttaaatggatttatgtttgtgtgtgcatgtatttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactaccacctgactactaaattttttaaatggatttatgtttgtgtgtgcatgtatttc 500

                                                                       
Query: 301 tgtgcaccatgtgctcatgaaagccaaaacagggcagatatggacactaggaatctcacc 360
           |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 tgtgcaccatatgctcatgaaagccaaaacagggcagatgtggacactaggaatctcacc 560

                                                                       
Query: 361 tctgtctcccagaagagcagccagtgcaggccccctggtaacatcctgtccagaaagact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgtctcccagaagagcagccagtgcaggccccctggtaacatcctgtccagaaagact 620

                           
Query: 421 gtgttcctgactctca 436
           ||||||||||||||||
Sbjct: 621 gtgttcctgactctca 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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