Query= MSMg01no414_b13.b1 MSMg01no414_b13.b1 CHROMAT_FILE:
MSMg01no414_b13.b1 PHD_FILE: MSMg01no414_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:59 2005
(579 letters)
>mm_chr5_125512235_125513213
Length = 979
Score = 1098 bits (568), Expect = 0.0
Identities = 574/576 (99%)
Strand = Plus / Minus
Query: 4 ggaattccatagcattgccagatggtgcagtccccactgggtgaggaaggttgtgttgac 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ggaattccatagcattgcaagatggtgcagtccccactgggtgaggaaggttgtgttgac 720
Query: 64 ctgaagttagcctcactctggaacccctgggccggtgggtgaccctggatgtgtagccag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ctgaagttagcctcactctggaacccctgggccggtgggtgaccctggatgtgtagccag 660
Query: 124 actcaagtgagcagggcgtccagcctctggacatcatgtcctgctaaaggtctctgtcca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 actcaagtgagcagggcgtccagcctctggacatcatgtcctgctaaaggtctctgtcca 600
Query: 184 tttgcccaagggattagagatgccccatcctgtgcagacatacaggaagagcggcatctg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tttgcccaagggattagagatgccccatcctgtgcagacatacaggaagagcggcatctg 540
Query: 244 gccagccaaatacagacctgcaccctctccccagggcatcccactcaagtacgactctgg 303
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 539 gccagccaaatacagacctgcaccctctccccagggcaccccactcaagtacgactctgg 480
Query: 304 ggcaccctccactggcaccaagaaacacgacgtgcgctccatcatcggcagccccggccg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ggcaccctccactggcaccaagaaacacgacgtgcgctccatcatcggcagccccggccg 420
Query: 364 gcctttccctgccctgcacccgctggacataatggctgacgcccgggcactggagcgtgc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gcctttccctgccctgcacccgctggacataatggctgacgcccgggcactggagcgtgc 360
Query: 424 ctgctatgaagagagtctgaagagccggtcagggaccagcagtggtgcagggggctccat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctgctatgaagagagtctgaagagccggtcagggaccagcagtggtgcagggggctccat 300
Query: 484 cacacgtggggctccagtcgtcgtgcctgaactgggcaagccacggcaaagcccactgac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cacacgtggggctccagtcgtcgtgcctgaactgggcaagccacggcaaagcccactgac 240
Query: 544 ttacgaagaccacggggcacccttcaccagtcacct 579
||||||||||||||||||||||||||||||||||||
Sbjct: 239 ttacgaagaccacggggcacccttcaccagtcacct 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_b13.g1 MSMg01no414_b13.g1 CHROMAT_FILE:
MSMg01no414_b13.g1 PHD_FILE: MSMg01no414_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:00 2005
(456 letters)
>mm_chr5_125341538_125342394
Length = 857
Score = 853 bits (441), Expect = 0.0
Identities = 453/457 (99%), Gaps = 1/457 (0%)
Strand = Plus / Plus
Query: 1 tctatcctccaactcggagatccacctgcttctgtctctggagagctgaaattttaaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatcctccaactcggagatccacctgcttctgtctctggagagctgaaattttaaggc 260
Query: 61 gtgcgccatcacgcccggctgcttttaacactcctaaaaggtgtctgcaagcctgtactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcgccatcacgcccggctgcttttaacactcctaaaaggtgtctgcaagcctgtactt 320
Query: 121 tgttatgaaaccgaccggtgccacctgtcacagagcacggtcacattttcctctcccggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttatgaaaccgaccggtgccacctgtcacagagcacggtcacattttcctctcccggc 380
Query: 181 tcccctctgtcatcagtggcacctctctgtcatcagtgaactagaccgtgcagctaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccctctgtcatcagtggcacctctctgtcatcagtgaactagaccgtgcagctaaaga 440
Query: 241 tacttgatgttttttcactcttagcccgcagggccggatccagcccgagggaaccgcaac 300
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacttgaggttttgacactcttagcccgcagggccggatccagcccgagggaaccgcaac 500
Query: 301 caggggtgctgcc-gctacctgcgagcgtggccagcgtgcgcgtccgcgggtcccgggag 359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggggtgctgcccgctacctgcgagcgtggccagcgtgcgcgtccgcgggtcccgggag 560
Query: 360 ctcagggcaaagagtacttacgcggagccacccggtcgccagagctgcaggtccgggagg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcagggcaaagagtacttacgcggagccacccggtcgccagagctgcaggtccgggagg 620
Query: 420 cggcaggtgtgacgcgggcaggcggctgaggcccgca 456
|||||||||||||||||||||||||||||||||||||
Sbjct: 621 cggcaggtgtgacgcgggcaggcggctgaggcccgca 657
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 857
Length adjustment: 10
Effective length of query: 446
Effective length of database: 847
Effective search space: 377762
Effective search space used: 377762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
