BAC Information

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BAC

Clone NameMSMg01-414C23
Chromosome5 (Build37)
Map Location 38,572,697 - 38,573,065
singlet/doubletsinglet
Overlap geneLOC100040397
Upstream geneGm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1, Msx1, Stx18, Nsg1
Downstream geneZfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414C23.T7 (MSMg01no414_c23.b1)MSMg01-414C23.TJ (MSMg01no414_c23.g1)
ACCAG510541AG510542
length752782
length of high quality
(start - end)		590 (55 - 644)479 (81 - 559)
definitionCHROMAT_FILE: MSMg01no414_c23.b1 PHD_FILE: MSMg01no414_c23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:07 2005CHROMAT_FILE: MSMg01no414_c23.g1 PHD_FILE: MSMg01no414_c23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTGTTTCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTGCAAATCTTTATACTCATTCTATCTATATTAAATA
TTCTTTATATCTATAAAATCTATGCTCCCACGTCTCACTGTAACTCTGAC
CCAGAACAGCCACTGATAGTCATGCAATGGGATGGAATGCTCCACACTGT
GAGGTTTTCCCTAGCGAATTAGCCAAGGACGAAATGCAGCCTAGCTCTTT
GCCATGGTGTTGTGAGGATGGACTCTAAACCAGTTTTCAGGAATTCTCAT
TTCTTATGTCCTCCTCAGGTGCTGTTTACTGTCCAAACGCCTACCGGCAT
CGGGGTGTCTTAGTGTCCCAGTGCCTTCTCTGTCTCCTTGTCTGAGCCTT
TGTTAGGATCACTCCAGATGCTCTATTCACAACACTAGAGGCTTATTTTA
GCTTCCAAAGTCTGCTTTTCTCGTTCCCTTAATCATTTTTAGGCTGCCTC
CATATTTTCAAGCATAGTAAAAAGTCCACTCCTTGGTACCAATTTTCTTC
ATGTGTCTATTTTGAATGACTGTAATGAAATACCTGAGACAGGCTAACTT
TAAAGAAAAGAGGTTTACTTAGCAAACAGTTTTGCGGGTTCAAGGATAAG
GCGCTGGTACCAATCATCCTAGCTTTGTTTAGGACCCCTTGGCTACACAT
GAGGTGGAGAAACTTGTGTGAAAACATCCGGATCAATAAACAATAAAGCC
CG

NNNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATACTTGTCCCTATAACA
TTAATTTTTTCAAAACCTACTTTTAATGGTGGTTCTTAAATATTTTAACC
TCCCTTCGATCTCACCACCCACCAGAGATAGTGGAAAAGAAAGGATATGG
GGGAAGTGAACCTGTTTAGAAATGGTTCTCTGAAGCAACTCCCATCTGTG
TTGTCTGATGTTGTCTAGAAATCAGCAGTTCATCTCACAGGTTAGCAATG
GCAGCTCGATGTACTTGCACAGAGTTCACAGATACATCAGTAGAGTTGGG
ATAGCAACCATGTAAGAATCAGCAGAGGTGGTACTACCTAGCAGAGACAG
CCAGACCTCAGCCTCAGTACAAGTCAGCAGGAGGGACCAGGGCCAATAGG
AATGCCAGGAAAAGTTCTCAGCCGTGGCTCTCTCAGCAAAGTGAAGATCA
GCGAAGACGCAAGACCATTGAATATTTAGCTATGCAAGCAAGCCAAGCTC
ACCCTCCATTACTGTCAAGTCCTTTTTCATTCTCCCTTTAACATCATGTA
TCCTCCACGGGTCTTGCCTCAACACATGTCTTGTCTCAACTTTAATCACT
CTGGCAAATCNCCCTGAGTACGCTAAAGAAGCAAGAAACCCCCGCGCCCC
CCCCAAAGTTTTTTGGTACATTTCCCCTTTTGGAGCCCCCCCAAATGGGT
TTAACTTTTTCTTGGGATGTGGAGAAAAGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_c23.b1 MSMg01no414_c23.b1 CHROMAT_FILE:
MSMg01no414_c23.b1 PHD_FILE: MSMg01no414_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:07 2005
         (590 letters)



>mm_chr5_38572697_38573686
          Length = 990

 Score =  615 bits (318), Expect = e-180
 Identities = 357/370 (96%), Gaps = 2/370 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgcaaatctttatactcattctatctatattaaatattctttatatctataaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gaattctgcaaatctttatactcattctatctatattaaatattctttatatctataaaa 310

                                                                       
Query: 65  tctatgctcccacgtctcactgtaactctgacccagaacagccactgatagtcatgcaat 124
           ||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tctatgctcacacatctcactataactctgacccagaacagccactgatagtcatgcaat 250

                                                                       
Query: 125 gggatggaatgctccacactgtgaggttttccctagcgaattagccaagg-acgaaatgc 183
           ||||||||| |||||| |||||||||||||| |||||||||||||| ||| |||||||||
Sbjct: 249 gggatggaacgctccatactgtgaggttttctctagcgaattagcc-aggaacgaaatgc 191

                                                                       
Query: 184 agcctagctctttgccatggtgttgtgaggatggactctaaaccagttttcaggaattct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 agcctagctctttgccatggtgttgtgaggatggactctaaaccagttttcaggaattct 131

                                                                       
Query: 244 catttcttatgtcctcctcaggtgctgtttactgtccaaacgcctaccggcatcggggtg 303
           |||||||||||||||||||||||||||||||||||||| ||  |||| ||||||||||||
Sbjct: 130 catttcttatgtcctcctcaggtgctgtttactgtccagacatctactggcatcggggtg 71

                                                                       
Query: 304 tcttagtgtcccagtgccttctctgtctccttgtctgagcctttgttaggatcactccag 363
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 70  tcttagtgtcccagtgccttctcggtctccttgtctgagcctttgttaggatcactccag 11

                     
Query: 364 atgctctatt 373
           ||||||||||
Sbjct: 10  atgctctatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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