TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCAGGGAATTGCCCTTACCTGGATAAAGAAAATTAGGTAAAAATAA
CTGTACTGGGGCATATAAAGTTTGCTTATCCAATGGGCCTCTCTTTCCAG
TACAGGGGAACGCCAGGGCCAAAAAATGGGAATGGGTGGGTAGGGAAGTG
GGGGGGNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNTNNNNTNNN
NNTTTTTTTTTNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTNNNTNNTTTNNTTTTTTTTTTTTTTTNNNNTNNNNNNNNNNNNNN
NNNNNNNNNNNNTTTTTCCCCCCCCTCCTCTTTTTGTTCTTTTTTTTTCT
TCTCCCTCCTCTTTTCCCCCCTTCTCTTTCTTTCTTTTCTCCCTTTTTTT
TTTTCTCTCCCTTTTCCTCTCCTTTTTTTCTCTTTCTCTTTTTCTCTTCT
TTTCTCTCTTCTTCCCCCTCTCCTCCCTTTTCTTTTCCTTCTTCTCTTTC
TCCCCTCTCCTTTCTATTTCTCTTTTCTTTCTCACTATTTTTCTCTCATT
TTTTCTCTATTTTTTTTCTCTTTTTTTTCCTTTTTCCTCTTCCTTTCTCT
CTTCTCTCTCTTTTTTCNCTCTACTTCTTTTCTCTCCTCCTCTTTCCCTC
CTCTCCCCTCTTTCTCTTTCTTTTTTTTCCCATCNACTCAAATTTATATC
TTATTACCTTTCTTTTTTCATAAACTTCACTTCACCAATTCTAATCCTAT
TCTTTATATTCATAATTTTATATATATTCCTCTTCAACTATATTCGATAT
CATGTTTTCTTTGATTCTGTTTGTATN

GATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTCACCTATTAAATATTCATTAGTGCC
AATGATATGTTATTGTTTCCAGGATATGGGGATACAAAAGCGAATAACAC
AAAGTTTCTAGTTTCCAGTCCCCCTGCCTAAGAATTAAATTCCAGGTCTG
GAAAATATTATCTAAGACATAATGAGAAATTTACATCTAAATGATTGTGC
ATTTTTATTAGCAAATTTAGTTCTCCAAGCCTAGTCATTATTATGGTTAA
TATGGGAATGTTTTGACACTAAGGTTGTTAAGAATCACTAAGAATCACAT
TATCAGTGAGCAGTGTCCAAAGTTTAATGACTTTATCTTGTTCTTTGTCA
AAGGAGCTTTTTATGTAATTTCATTTTTTGTTTGAGAGAACTCATTAAAA
TTCTGATTTGTACAACCTCATATAAGATTGATTTTGGAATAGATGCAAAG
GGATCCAAACTCTGTTCACTAAAGCAAAACCATTTCAGTGATTTTGGTGA
ATGAACTCCACCACCAAGGAGAATTCTCTAAGGGAACAGCATCGGTAGGG
GGAATATAAGTAATCCATGTGGATTTATTAACAGGCTTAGAGGACGTCCA
CCTGATAGCCCAACTGTGTTTTGTTTCTATTTGGAAAAGGTCAAAAACCT
GGTTGTTTGGCACTTCCAATGAAGGAGGCTTAATTTCCTCTGGAGTTGGG
GCTTTGGTCTTTTAAAAAATTTTCTATTT

Query= MSMg01no414_j11.g1 MSMg01no414_j11.g1 CHROMAT_FILE:
MSMg01no414_j11.g1 PHD_FILE: MSMg01no414_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:41 2005
         (488 letters)



>mm_chr5_80959901_80960788
          Length = 888

 Score =  920 bits (476), Expect = 0.0
 Identities = 485/488 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcacctattaaatattcattagtgccaatgatatgttattgtttccaggatatgggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 attcacctattaaatattcattagtgccaatgatatgttattgtttccaggatatgggga 629

                                                                       
Query: 61  tacaaaagcgaataacacaaagtttctagtttccagtccccctgcctaagaattaaattc 120
           ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 628 tacaaaagcaaataacacaaagtttctagtttcctgtccccctgcccaagaattaaattc 569

                                                                       
Query: 121 caggtctggaaaatattatctaagacataatgagaaatttacatctaaatgattgtgcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 caggtctggaaaatattatctaagacataatgagaaatttacatctaaatgattgtgcat 509

                                                                       
Query: 181 ttttattagcaaatttagttctccaagcctagtcattattatggttaatatgggaatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttttattagcaaatttagttctccaagcctagtcattattatggttaatatgggaatgtt 449

                                                                       
Query: 241 ttgacactaaggttgttaagaatcactaagaatcacattatcagtgagcagtgtccaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttgacactaaggttgttaagaatcactaagaatcacattatcagtgagcagtgtccaaag 389

                                                                       
Query: 301 tttaatgactttatcttgttctttgtcaaaggagctttttatgtaatttcattttttgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tttaatgactttatcttgttctttgtcaaaggagctttttatgtaatttcattttttgtt 329

                                                                       
Query: 361 tgagagaactcattaaaattctgatttgtacaacctcatataagattgattttggaatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgagagaactcattaaaattctgatttgtacaacctcatataagattgattttggaatag 269

                                                                       
Query: 421 atgcaaagggatccaaactctgttcactaaagcaaaaccatttcagtgattttggtgaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atgcaaagggatccaaactctgttcactaaagcaaaaccatttcagtgattttggtgaat 209

                   
Query: 481 gaactcca 488
           ||||||||
Sbjct: 208 gaactcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)