Query= MSMg01no414_m08.b1 MSMg01no414_m08.b1 CHROMAT_FILE:
MSMg01no414_m08.b1 PHD_FILE: MSMg01no414_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:55 2005
(488 letters)
>mm_chr5_58247274_58248163
Length = 890
Score = 905 bits (468), Expect = 0.0
Identities = 484/490 (98%), Gaps = 2/490 (0%)
Strand = Plus / Plus
Query: 1 aaatgtttctcacccttactcctaaattcagtgcatctgaagaatgatgcctagaagaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgtttctcacccttactcctaaattcagtgcatctgaagaatgatgcctagaagaac 260
Query: 61 gaagagattacaaggaaaaaagtaattttataagattaatatagacattctccctctccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagagattacaaggaaaaaagtaattttataagattaatatagacattctccctctccc 320
Query: 121 tctccctctgcctctcgttccccctcttttatcttgtctcagtcactgccttggtggtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctccctctgcctctcgttccccctcttttatcttgtctcagtcactgccttggtggtaa 380
Query: 181 gactttgtaatatatacatcttgcttcttgtcagaagcaagttcagctccatcatgtctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactttgtaatatatacatcttgcttcttgtcagaagcaagttcagctccatcatgtctg 440
Query: 241 tacagatattcttcctttctgttgattgatcaagtatttatgataaagtatgttccctcc 300
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacagatattcatccttgctgttgattgatcaagtatttatgataaagtatgttccctcc 500
Query: 301 cccccc--tttgagtagaaaacaaggagaagggcaagttaattttgaacttatgaaatgg 358
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccccccctttgagtagaaaacaaggagaagggcaagttaattttgaacttatgaaatgg 560
Query: 359 tgtaagattatattgcaaaagcttcaacgtcagacatgagaggcaggtgatcttacagat 418
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 tgtaagattatattgcaaaagcttcaacgtcagacatgagagacaggtgatcttacagat 620
Query: 419 gcaatatacacaagcttgatttttttttctttctttaaaaatttaaaaccatggtagaaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 gcaatatacacaagcttgatttttttttctttctttaaaaatttaaaaccatgctagaaa 680
Query: 479 catagagaat 488
||||||||||
Sbjct: 681 catagagaat 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 890
Length adjustment: 10
Effective length of query: 478
Effective length of database: 880
Effective search space: 420640
Effective search space used: 420640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_m08.g1 MSMg01no414_m08.g1 CHROMAT_FILE:
MSMg01no414_m08.g1 PHD_FILE: MSMg01no414_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:55 2005
(249 letters)
>mm_chr5_58439620_58440268
Length = 649
Score = 474 bits (245), Expect = e-138
Identities = 248/249 (99%)
Strand = Plus / Minus
Query: 1 taatgttttctatgcttatactgatttgtcgaaactacatttttcaggttcatttcttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 taatgttttctatgcttatactgatttgtcgaaactacatttttcaggttcatttcttgt 390
Query: 61 cgaggctctgagaggatctggtaaggatctcccagaagtttacagttctgcaagtgttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cgaggctctgagaggatctggtaaggatctcccagaagtttacagttctgcaagtgttgc 330
Query: 121 catcatccagtgggtgttaaataacgctttcccctgtaacttgatttgtggagaaataaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 catcatccagtgggtgttaaataacgctttcccctgtaacttgatttgtggagaaataaa 270
Query: 181 actatggaataaaaagagagacacacatacaacttagaggcatatttttctgagagaact 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acgatggaataaaaagagagacacacatacaacttagaggcatatttttctgagagaact 210
Query: 241 ttttaaaaa 249
|||||||||
Sbjct: 209 ttttaaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
