Query= MSMg01no414_m11.b1 MSMg01no414_m11.b1 CHROMAT_FILE:
MSMg01no414_m11.b1 PHD_FILE: MSMg01no414_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:56 2005
(246 letters)
>mm_chr5_126312560_126313205
Length = 646
Score = 190 bits (98), Expect = 8e-53
Identities = 201/240 (83%), Gaps = 17/240 (7%)
Strand = Plus / Plus
Query: 10 tctccttacatcacatag-atattttctacagt-gcatataag---cacatatattttag 64
||||||||||||||| || | ||||||||| || | |||||| ||||||||||||||
Sbjct: 213 tctccttacatcaca-aggacattttctactgtag-atataataaacacatatattttag 270
Query: 65 aatatactgaaactt-aaaaatgtaaattaaaaaaaaaacaaaaacctctaccaacttca 123
||||||| ||||||| ||||||| |||| ||||||| || ||||||| ||||
Sbjct: 271 aatatacagaaacttgaaaaatggaaatggaaaaaaatac------ctctaccgactttg 324
Query: 124 aattaaaaaaacacatttattttagaattctctaggatactcgcaatttcctgtattccc 183
|||||||||| |||||||||||||||||||||||||||| | ||||||||| | || |||
Sbjct: 325 aattaaaaaa-cacatttattttagaattctctaggatagttgcaatttcccgcataccc 383
Query: 184 tactcatgatgtccatatgttagcatcttaca-aatttgtatgacaataatgaggagaaa 242
||| |||||| ||||||| ||||||||||||| ||| |||||| |||||| ||||||||
Sbjct: 384 tacacatgatttccatatattagcatcttacataatc-gtatgaaaataattaggagaaa 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no414_m11.g1 MSMg01no414_m11.g1 CHROMAT_FILE:
MSMg01no414_m11.g1 PHD_FILE: MSMg01no414_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:56 2005
(249 letters)
>mm_chrX_143707001_143707649
Length = 649
Score = 223 bits (115), Expect = 1e-62
Identities = 212/245 (86%), Gaps = 10/245 (4%)
Strand = Plus / Minus
Query: 5 ttgtatctgtacaagatcaagggtcga-tgtggagaggagagaaggcctgaatatttcat 63
|||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||
Sbjct: 444 ttgtatctgtacaagatc-agggtcgagt-tggagaggagagaaggcctgaatatttcat 387
Query: 64 gattgagacttcctgggaagctagaacacacaaatcatgcaggacattcaacagct-taa 122
|| ||| ||| |||||| ||||||||| || |||||||||| ||| |||||| | |||
Sbjct: 386 tatcgaggtttcttgggaacctagaacacgcatatcatgcaggccatgcaacag-tgtaa 328
Query: 123 tcaatctccagtgtgctaggagacatttcccagctagttctcctgataattctgc-gcct 181
||||||| |||| ||||||||| || ||||||||||||||||||||||| || || | ||
Sbjct: 327 tcaatcttcagtatgctaggaggcacttcccagctagttctcctgataaatcagctggct 268
Query: 182 acttctaaaaatggcaaggttttctcat-ttt-tgctggtcagcttaatgtctatgtcct 239
|||| | |||||||||||| ||||| | ||| |||||| || |||||||| ||||||||
Sbjct: 267 acttttgaaaatggcaaggctttct--tgtttctgctggccaacttaatgtatatgtcct 210
Query: 240 gggtt 244
|||||
Sbjct: 209 gggtt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
