Query= MSMg01no415_j24.b1 MSMg01no415_j24.b1 CHROMAT_FILE:
MSMg01no415_j24.b1 PHD_FILE: MSMg01no415_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:04 2005
(458 letters)
>mm_chr5_19457975_19458831
Length = 857
Score = 768 bits (397), Expect = 0.0
Identities = 440/455 (96%), Gaps = 3/455 (0%)
Strand = Plus / Minus
Query: 5 gaattcattaagtttgcccttgggacaaatacaacaataaaacaaacaaagaaacaaaca 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gaattcattaagtttgtccttgggacaaatacaacaataaaacaaacaaagaaacaaaca 659
Query: 65 atgaagaaagcattatagatataaggactgaagactcccttcttatcctggcaggccaaa 124
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 658 atgaagaaagcattatagatataaggactgaagactcctttcttatcccggcaggccaaa 599
Query: 125 gatgaattccactgaagcttattaatagcccaaatgctacatatttcctctgcaaacaac 184
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 598 gatgaattccactgaagcttattaatagcccaaatgctacatatttcctttgcaaacaac 539
Query: 185 ctcaaaatcttcgccttatactccagcacccctggcccaaaaaaaaaaaaaaaaaaagcc 244
|||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 538 ctcaaaatcttccccttatactccagcacccctggtcaaaaaaaaaaaaaaaaaaaagcc 479
Query: 245 ttctgttttctttatattttcaaaaggcagccaattttctcaatgaggaaaaggaaaaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttctgttttctttatattttcaaaaggcagccaattttctcaatgaggaaaaggaaaaaa 419
Query: 305 a-aagttccttaaaatagctctccacgctgttctataatccgttttttacccccctttaa 363
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 418 agaagttccttaaaatagctctccacgctgttctataatccgttttt--cccccctttaa 361
Query: 364 aggcaatctcaaaatcgtaagacacttcttcctttaagtgaatcagcctgctgttgtaac 423
|| ||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agccaacctcccaatcataagacacttcttcctttaagtgaatcagcctgctgttgtaac 301
Query: 424 cttttctatgtgggatgtttttcagtacttacaaa 458
|||||||||||||||||||||||||||||||||||
Sbjct: 300 cttttctatgtgggatgtttttcagtacttacaaa 266
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 857
Length adjustment: 10
Effective length of query: 448
Effective length of database: 847
Effective search space: 379456
Effective search space used: 379456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no415_j24.g1 MSMg01no415_j24.g1 CHROMAT_FILE:
MSMg01no415_j24.g1 PHD_FILE: MSMg01no415_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:04 2005
(464 letters)
>mm_chr5_19311876_19312739
Length = 864
Score = 884 bits (457), Expect = 0.0
Identities = 462/464 (99%)
Strand = Plus / Plus
Query: 1 agagtaggatcctagaggccaactagtaaattttctgctctttccaattgagtttgtatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagtaggatcctagaggccaactagtaaattttctgctctttccaattgagtttgtatg 260
Query: 61 tgggttttttgtcatttgtgcatttggtttaattggcattggctatgaacaaatgagcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggttttttgtcatttgtgcatttggtttaattggcattggctatgaacaaatgagcca 320
Query: 121 ataagggcagagcccacttttagcttcacactttctgttggtggaaatgcacagtgcgct 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataagggcagagcccgcttttagcttcacactttctgttggtggaaatgcacagtgcgct 380
Query: 181 tgcatttcaaaaataaacacaaatcacttctgcaataaagtagtaaatgagggctcagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatttcaaaaataaacacaaatcacttctgcaataaagtagtaaatgagggctcagaa 440
Query: 241 taggtgagtggggaattgaagagtaatactaattcattattaagagccagtatgtagtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taggtgagtggggaattgaagagtaatactaattcattattaagagccagtatgtagtgt 500
Query: 301 tagccacaataattctattcatttatgtggcatcttgtggtattcaaagattactttctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagccacaataattctattcatttatgtggcatcttgtggtattcaaagattactttctc 560
Query: 361 atatactcttgtattttatccttgaaacagtcttggagaaataccatagcaattcttaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatactcttgtattttatccttgaaacagtcttggagaaataccatagcaattcttaat 620
Query: 421 gtttttttatttttgtatgaaacaataatatangcagagcttga 464
|||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 gtttttttatttttgtatgaaacaataatataggcagagcttga 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
