BAC Information

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BAC

Clone NameMSMg01-415L06
Chromosome5 (Build37)
Map Location 84,417,290 - 84,573,334
singlet/doubletdoublet
Overlap geneEpha5, LOC100039489
Upstream geneLOC100039434, Srd5a2l2, LOC100039608, LOC231368
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415L06.T7 (MSMg01no415_l06.b1)MSMg01-415L06.TJ (MSMg01no415_l06.g1)
ACCAG511699AG511700
length799754
length of high quality
(start - end)		270 (42 - 311)428 (71 - 498)
definitionCHROMAT_FILE: MSMg01no415_l06.b1 PHD_FILE: MSMg01no415_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:09 2005CHROMAT_FILE: MSMg01no415_l06.g1 PHD_FILE: MSMg01no415_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,417,290 - 84,417,555)(84,572,908 - 84,573,334)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTAGGATAAATTTGGAGTTGATGATGTATGCCTTTACTCACTGAGTCAT
CTCACTGATTCTCAAATTTAATGTTGCATGTGGTTCCCAAAAAACATGTT
CAAAGTAACCAATGAATAAATAATATGTTATATTATTATATTATATATTA
TATTTAGAGAAATAAGAGGATATGATAATAGTAAATTATTTGGCAATGGA
TATAAAAGGTTGAGTATATCAAATCAGTAGTGGAGCATGCTTGAAGATAT
TAAGATAAGGACTCTTTTTATGTTTGTTATACTATGCTTCTAGGTGCCTG
GTTCTGGACGTTGATCATTGTATTATTGTCTAACCTTGCTTCTGGTACAC
ACAGTTCCCCCACCCACTTCTACGCATCTCGCCTTTCCGTACCCTTATTG
CTTCTTCTTTTCTACCTTTTTCTAGCCCCTTTCTCCTCCCCACGCCTTCA
CTTTCCCTTCTCCCTCCTTCATCTTCTTCTTCTTTTTCCTCTCTCCATTT
TTCCGCCCCTCCTTTTCCCCTTTCTCCCCCTCCCCCTCTCCCCCCTTTTT
CTTTTCTTTCCGCCCCTTCCTCCCTCTCCCCTTTTTCTTTTTATTTTCTC
CTTTTCCCTTCCTTCCCCATCCTTTTTTCTCTTTGTCCCGTCCCCCTTCC
CCTTCTCTTCTTTTTCCCCCCTTTTTTTTTCTTTTTCTTTCTCGCCTCCC
GTCCCCTTGCCTTTCCTTCACCGTCTATCCTCGCTTCCCCTTCCTTATG

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTAACATCATGTATAGGCTCAGAAGCAAA
GCGGTATTTCAAAGAGGTGGAGCAATACTGACTTTCAGTAGATGAGGTTC
TGTCCATATAATTTATGAAGAATGCCAGAAGATAGGAATAAGCAGGTAAA
ACAAACAGAAGACAATAAATAAGAACCAAAAACCAAGCATATTTACCTAA
GCAGGTTAGCGGTTATGAAATTATACTAAGATCTTGGAAGGAGCAAAATC
TGTCATGGGAAAGGAGTGGTTTTGGCAATGACATGAGGTTAAAAATAAAA
GGAGAGACTGTGTGCTTACGCTGAACCAGAGTCTATCTTGTCTAGTCTTG
TTTATCTAGAAGGGTAGACATTTCTACAATGTAAGAAAGTGATGGTTAAT
GCCCAGAAAAGGTTAGCAAGAATCATTATAAGGAACATTTTGTTTCACAA
TGAATGAAGCCTATAAATGAATGAAGCCCATAAATGAATCCCAGTTGGTG
CTGTATCCTACTTATCATATTAGACCCGTTTCTATTTTGAGCCAAGATTT
TTTCACTACCTTTCTTCACGGGTGGGCAATTTTTTCCTAGCCGTTCTACG
TCTTTTTTTCCTACCCCTTTTCCCAATTTTATCCCTCCGCTGGGGGTCTC
TCCTCCTCTTACGTCGTTATTCCCTTTTTGCCACTCTTTATCCATGCTCC
ACGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_l06.b1 MSMg01no415_l06.b1 CHROMAT_FILE:
MSMg01no415_l06.b1 PHD_FILE: MSMg01no415_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:09 2005
         (270 letters)



>mm_chr5_84417086_84417755
          Length = 670

 Score =  499 bits (258), Expect = e-146
 Identities = 264/266 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaggataaatttggagttgatgatgtatgcctttactcactgagtcatctcac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaggataaatttggagttgatgatgtatgcctttactcactgagtcatctcac 264

                                                                       
Query: 65  tgattctcaaatttaatgttgcatgtggttcccaaaaaacatgttcaaagtaaccaatga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgattctcaaatttaatgttgcatgtggttcccaaaaaacatgttcaaagtaaccaatga 324

                                                                       
Query: 125 ataaataatatgttatattattatattatatattatatttagagaaataagaggatatga 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 ataaataatatgttatattattatattatatattatatttagagaaataagagggtatga 384

                                                                       
Query: 185 taatagtaaattatttggcaatggatataaaaggttgagtatatcaaatcagtagtggag 244
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 385 taatagtaaattatttggcaatggatataaaaggttgagtatatcaaaccagtagtggag 444

                                     
Query: 245 catgcttgaagatattaagataagga 270
           ||||||||||||||||||||||||||
Sbjct: 445 catgcttgaagatattaagataagga 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no415_l06.g1 MSMg01no415_l06.g1 CHROMAT_FILE:
MSMg01no415_l06.g1 PHD_FILE: MSMg01no415_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:09 2005
         (428 letters)



>mm_chr5_84572708_84573535
          Length = 828

 Score =  733 bits (379), Expect = 0.0
 Identities = 415/427 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaacatcatgtataggctcagaagcaaagcggtatttcaaagaggtggagcaatactg 60
           ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 627 actaacatcatgtataggctcagaagcaaagaggtatttcaaaggggtggagcaatactg 568

                                                                       
Query: 61  actttcagtagatgaggttctgtccatataatttatgaagaatgccagaagataggaata 120
           ||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 567 actttcagtagatgaggctctgtccatataattcatgcagaatgccagaagataggaata 508

                                                                       
Query: 121 agcaggtaaaacaaacagaagacaataaataagaaccaaaaaccaagcatatttacctaa 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 507 agcaggtaaaacaaacagaagacaataaataggaaccaaaaaccaagcatatttacctaa 448

                                                                       
Query: 181 gcaggttagcggttatgaaattatactaagatcttggaaggagcaaaatctgtcatggga 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gcaggttagtggttatgaaattatactaagatcttggaaggagcaaaatctgtcatggga 388

                                                                       
Query: 241 aaggagtggttttggcaatgacatgaggttaaaaataaaaggagagactgtgtgcttacg 300
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 387 aaggagtggttttaacaatgacatgaggttaaaaataaaaggagagactgtgtgcttaca 328

                                                                       
Query: 301 ctgaaccagagtctatcttgtctagtcttgtttatctagaagggtagacatttctacaat 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 327 ctgaaccagagtctatcttgtctagtcttgtttatctagaaggctagacatttctacaat 268

                                                                       
Query: 361 gtaagaaagtgatggttaatgcccagaaaaggttagcaagaatcattataaggaacattt 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 267 gtaagaaagtgatggttaatgcccagaaaaggttatcaagaatcattataaggaacattt 208

                  
Query: 421 tgtttca 427
           |||||||
Sbjct: 207 tgtttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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