BAC Information

Click to search

BAC

Clone NameMSMg01-415N03
Chromosome5 (Build37)
Map Location 138,132,311 - 138,132,804
singlet/doubletsinglet
Overlap genenone
Upstream geneMylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl
Downstream geneLOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415N03.T7 (MSMg01no415_n03.b1)MSMg01-415N03.TJ (MSMg01no415_n03.g1)
ACCAG511788AG511789
length767725
length of high quality
(start - end)		378 (42 - 419)493 (72 - 564)
definitionCHROMAT_FILE: MSMg01no415_n03.b1 PHD_FILE: MSMg01no415_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:18 2005CHROMAT_FILE: MSMg01no415_n03.g1 PHD_FILE: MSMg01no415_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAACTGATTCCAAAACATGACTAGTACAGAGCCCATGACTTGGAATTAAG
AAGCCAGCAGAGGCAGCAGTGGAGCAGGGCACAAGGGGCAGCTGAGTTCC
TGTAGAACTCACCAGAACCTGTTGTGGAAAACTGCTACTGTCCAGTACAT
GACATATAGCAGTCTTGTCAGGTCCAGCGCCTTCTTGGGTGAGTTAGCAA
TTGAGTCACCATTCCCCAGAGGCCCCAGAGAAGAGGGGAAAGGCAGATGA
AATCTGGAGGTGAAGACTCATGATCAGGACTACAACCTCACAGATCTAAC
TGCAGCTAAGAATGTGGTTCATGTGGTGGAGTGCTTACTTCTTGTGTGTG
CCCGACTTGCCAGCAAGGTCGACGCTGCAGCAGGATCCTTCTGCATACGT
TTATTGAGAGAGCTTGATTGCACAGGCAAATAGACCCCTTCGCCCAAAAT
CGGGGCTGCCTAATAAAGCCCCAAGAAAAGGTTCGCCTCCTACCCTGGAT
CGCTTTGGTCCTCGGCTAATCGCTTAACCCTTTCCATTGCTTTGGCCCAC
CTTCCACATGGGATAACGGGCCCCCCACCCCCGACAGAGCCCCCTCTGCC
CGTTACCCTCTACCCACTCTCATTTTTGGGCTATTCTTCCTCTCTTACGC
CCCTTACGGTATTTTCGCTTCTCTTTTGACCAATTGGCCTTCCCCGCCCC
TTATCGGCTATACTCCG

TTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAATAGAAAGTAGCTACAAAACAAAATA
TACTGAGAGCGTTAACTAAGTATGGCAGTGCAGGATCCGAATCTCAGCAG
GAGAATCTGAAGTTCAAGGTTGCCGTCAGCTACAGAGGGAGTTTGAGGCC
AGCCTGGGCTACATGAGAGTTCATCTGAAAAATAAAATAGAATAAAACAA
ATAAAAGAAAGAAAAGGAGAAGATAACAATTGTCGTTGCGGATTTACAGA
AGCAGGGATCCTTGTATATTCTCACATATAGAATTATTAGATATAGGGCT
GGCAAGATGGCTCAGCGGGTAAGAGCACTGACTGTTCTTCTGAAGGTCCT
GAGTTCGAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAG
ATCTGACTCCCTCTTCTGGTGCATCTGAAGACAGCTATAGTGTAATTACT
TATAATAAATCTTTATAGTATATTTTTATATATTATAGTATAATTACTTA
TAATAAATCTTTGGGTCGGAGTGAGCACGGCTGACTGGAAGGAGCGAGCA
GAGGTCCTAAATTCGATTCTCACGAACCATATGATGGTACCTAATCATCT
GTATCGCTACCGTATACTAATGATCTTATCATCAATCGCTCCTTTTTACC
TAATTTTCCTTAAAAAATGAACTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_n03.g1 MSMg01no415_n03.g1 CHROMAT_FILE:
MSMg01no415_n03.g1 PHD_FILE: MSMg01no415_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:18 2005
         (493 letters)



>mm_chr5_138132111_138133003
          Length = 893

 Score =  917 bits (474), Expect = 0.0
 Identities = 489/494 (98%), Gaps = 1/494 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaatagaaagtagctacaaaacaaaatatactgagagcgttaactaagtatggcagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaatagaaagtagctacaaaacaaaatatactgagagcgttaactaagtatggcagtgc 260

                                                                       
Query: 61  aggatccgaatctcagcaggagaatctgaagttcaaggttgccgtcagctacagagggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggatccgaatctcagcaggagaatctgaagttcaaggttgccgtcagctacagagggag 320

                                                                       
Query: 121 tttgaggccagcctgggctacatgagagttcatctgaaaaataaaatagaataaaacaaa 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgagaccagcctgggctacatgagagttcatctgaaaaataaaatagaataaaacaaa 380

                                                                       
Query: 181 taaaagaaagaaaaggagaagataacaattgtcgttgcggatttacagaagcagggatcc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 taaaagaaagaaaaggagaagataacaattgtcgttgcggatttacagaagcagcgatcc 440

                                                                       
Query: 241 ttgtatattctcacatatagaattattagatatagggctggcaagatggctcagcgggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtatattctcacatatagaattattagatatagggctggcaagatggctcagcgggta 500

                                                                       
Query: 301 agagcactgactgttcttctgaaggtcctgagttcgaatcccagcaaccacatggtggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagcactgactgttcttctgaaggtcctgagttcgaatcccagcaaccacatggtggct 560

                                                                       
Query: 361 cacaaccatctgtaatgagatctgactccctcttctggtgcatctgaagacagctata-g 419
           |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 561 cacaaccatccgtaatgagatctgacgccctcttctggtgcatctgaagacagctataag 620

                                                                       
Query: 420 tgtaattacttataataaatctttatagtatatttttatatattatagtataattactta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtaattacttataataaatctttatagtatatttttatatattatagtataattactta 680

                         
Query: 480 taataaatctttgg 493
           ||||||||||||||
Sbjct: 681 taataaatctttgg 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |