Query= MSMg01no415_o14.b1 MSMg01no415_o14.b1 CHROMAT_FILE:
MSMg01no415_o14.b1 PHD_FILE: MSMg01no415_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:25 2005
(505 letters)
>mm_chr5_80506334_80507237
Length = 904
Score = 822 bits (425), Expect = 0.0
Identities = 485/507 (95%), Gaps = 5/507 (0%)
Strand = Plus / Plus
Query: 1 aggatattttttgcccaagtcaaatggtatttataagagattgtgttctgctaggcattt 60
|||||||| ||||||||||||||| ||||||||||||| |||||||| ||||| |||||
Sbjct: 201 aggatattgtttgcccaagtcaaaaggtatttataagacattgtgttttgctaatcattt 260
Query: 61 gacatgccctccaactcacagaacctctgcttttatggtgcttgagtcaacagctttgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacatgccctccaactcacagaacctctgcttttatggtgcttgagtcaacagctttgtg 320
Query: 121 gatgtccgagaatccaatgggccactccaattctttttagatgaaacagagtgctcccac 180
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 tatgtccgagaatccaatgggccactccaattcattttagatgaaacagagtgctcccac 380
Query: 181 atatttataggccttagtgcattactcattttctttacattcctttggtagatgtttttt 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct: 381 atatttataggccttagtgcattactcattttctttacattcctttggtcgat---tatt 437
Query: 241 ttttttaatatatgaaaagaacagcatgaccccaactttaaaactgaaatttccactaat 300
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 438 ttttttaatatatgaaaagaacagcaggaccccaactttaaaactgaaaattccactaat 497
Query: 301 ctataattattcatgtaatatcacccatgctggtgcaaaattcaaatgagtttccaacac 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctatagttattcatgtaatatcacccatgctggtgcaaaattcaaatgagtttccaacac 557
Query: 361 attccattttaaagggacttcatttgctttctttcaatggttttctccagtgctgctctc 420
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 558 attccattttaaagggacttcatttgatttctttcaatggtttcctccagtgctgctctc 617
Query: 421 agcctgcattattcatatgca--accacatgaattgctttgagttccagcagcacagatg 478
||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct: 618 agcctgcattattcatatgcacaaccacatgaattgctttgagttccagcagaagagatg 677
Query: 479 taaatcatagggctgttttctctggaa 505
|||||||||||||||||||||||||||
Sbjct: 678 taaatcatagggctgttttctctggaa 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 904
Length adjustment: 10
Effective length of query: 495
Effective length of database: 894
Effective search space: 442530
Effective search space used: 442530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no415_o14.g1 MSMg01no415_o14.g1 CHROMAT_FILE:
MSMg01no415_o14.g1 PHD_FILE: MSMg01no415_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:25 2005
(565 letters)
>mm_chr5_80657875_80658838
Length = 964
Score = 905 bits (468), Expect = 0.0
Identities = 510/524 (97%), Gaps = 1/524 (0%)
Strand = Plus / Minus
Query: 1 cactgagtattcctgagtatattttctagattctattattaattagcaagcctgaaattc 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 523 cactgagtattcctgagtatattttctagattctattattaattagtaagcctgaaattc 464
Query: 61 aattgaaaaaacaaagcagtaaaggacaaatattattggaaagtgtgtttacctagtgtt 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aattgaaaaaacaaagcagcaaaggacaaatattattggaaagtgtgtttacctagtgtt 404
Query: 121 aggtttttgttataaccaatgtaactacagaatgatgctatcataagaaagcaaattaaa 180
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 403 aggttttcgttataaccaatgtaactacaaaatgatgctatcataagaaagcaaattaaa 344
Query: 181 tttagggaacagaatatatcatctataaaaattatatagaagtaagtcaacatttttaat 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tttagggaatagaatatatcatctataaaaattatatagaagtaagtcaacatttttaat 284
Query: 241 tcattgatgaaaaagattatttttattaatgagtacaacacaacgtactatttgtctcaa 300
||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 283 tcaatgaggaaaaa-attatttttattaatgagtacaacacaacatactatttgtctcaa 225
Query: 301 agcaaaaaaattatctggtctttcatttttaaatatgttatataacacattaaaatttaa 360
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 224 agcaaaaacattatctggtctttcatttttaaatatattatataacacattaaaatttaa 165
Query: 361 aattaaaacaaattgactgatataacgaataaaacataaataatatataagtaaaacatg 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 164 aattaaaacaaattgactgatataatgaataaaacataaataatatataagtaaaacatg 105
Query: 421 aaaagtaagactttccttatactacagaatggattctattacaaaaatacagaaatgtta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 aaaagtaagactttccttatactacagaatggattctattacaaaaatacagaaatgtta 45
Query: 481 catctttcaaaatgtgacaacatacaatataaataaagggtaaa 524
||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 44 catctttcaaaatttgacaacatacaataaaaataaagggtaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 964
Length adjustment: 10
Effective length of query: 555
Effective length of database: 954
Effective search space: 529470
Effective search space used: 529470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
