Query= MSMg01no416_h21.b1 MSMg01no416_h21.b1 CHROMAT_FILE:
MSMg01no416_h21.b1 PHD_FILE: MSMg01no416_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:07 2005
(538 letters)
>mm_chr5_90893838_90894776
Length = 939
Score = 961 bits (497), Expect = 0.0
Identities = 521/529 (98%), Gaps = 1/529 (0%)
Strand = Plus / Plus
Query: 11 gaattccagcctattatcttgatcatcttatggccagattcaggagacttggctttctgc 70
||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 211 gaattccagcctaagattttgatcatcttatggccagattcaggaggcttggctttctgc 270
Query: 71 atgaaacatctctttcttcttaacttaccaacagattttcgttcttatgcctttcttcct 130
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 271 atgaaacatctctttcttcttaacttaccaacagatttttgttcttatgcctttcttcct 330
Query: 131 tctaaactttagcagtggtctgagagagggaattcttgtacttgcgttccttgtcttctc 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tctaaactttagcagtggtctgagagagggaattcttgtacttgcgttccttgtcttctc 390
Query: 191 attcttcatggtaatgctgtctacagtagaagactctttgtcaaactgtgcagaaatggc 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 attcttcatggtaatgctgtctacagtagaagactctttgtcaaactgtgcagaaatggc 450
Query: 251 taggttttttttctttgtttttgcttttattttttgaccttctctgaggcattttactgg 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 taggttttttttctttgtttttgcttttattttttgaccttctctgaggcattttactgg 510
Query: 311 agctttcttaaattcgaaggagagaatttttactgaggctagaagttcgagttcattcct 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 agctttcttaaattcgaaggagagaatttttactgaggctagaagttcgagttcattcct 570
Query: 371 tccttccataaatatttgttacatgcagtattcattttttggaggcacttactgatttta 430
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 571 tccttccataaatatttgttacatgcagcattcattttttggaggcacttactgatttta 630
Query: 431 tgaaagttaatggaggaaggactgaaatggattagtcacaaaataaaaaa-gccagtaca 489
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 631 tgaaagttaatggaggaaggactgaaatggattagtcacaaaataaaaaaagtcagtaca 690
Query: 490 ggtatatgtgctgggacatctcctttccggacccttccctcagcaatgt 538
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ggtatatgtgctgggacatctcctttccggacccttccctcagcaatgt 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 939
Length adjustment: 10
Effective length of query: 528
Effective length of database: 929
Effective search space: 490512
Effective search space used: 490512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_h21.g1 MSMg01no416_h21.g1 CHROMAT_FILE:
MSMg01no416_h21.g1 PHD_FILE: MSMg01no416_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:08 2005
(454 letters)
>mm_chr5_91089501_91090354
Length = 854
Score = 839 bits (434), Expect = 0.0
Identities = 449/454 (98%)
Strand = Plus / Minus
Query: 1 ccattgggttttaagaaaccaaactttcttagcctttgtgtctgttccactgtactgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ccattgggttttaagaaaccaaactttcttagcctttgtgtctgttccactgtactgtaa 595
Query: 61 gtcacttcaggtgaagaatttgtttttcaagctacggtgagtgaaggtctcactgcggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gtcacttcaggtgaagaatttgtttttcaagctacggtgagtgaaggtctcactgcggag 535
Query: 121 ctcttcctgcagaggaagaggcagagttgtctctaggtgagcacagtgttcagataactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ctcttcctgcagaggaagaggcagagttgtctctaggtgagcacagtgttcagataactc 475
Query: 181 ttccacagagcatccagatatcaccatcgggagagggtaggtgaggaaagatgctggtgc 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttccacagagcatccagatgtcaccatcgggagagggtaggtgaggaaagatgctggtgc 415
Query: 241 tgagtcagcccgttacctctcacccatttgcgtaactgcatgaaatccaatttatgtcaa 300
|||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 414 tgagtcagcccgggacctctcacccatttgcataactgcatgaaatccagtttatgtcaa 355
Query: 301 attcaaggaaaaaccagctttgtttcctgcatgtttggtggaaatgcagtcatggctggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 attcaaggaaaaaccagctttgtttcctgcatgtttggtggaaatgcagtcatggctggt 295
Query: 361 actaagaacaggaaatcgcattgagaaataaaacatgagcaaaccgattgttcttacttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 actaagaacaggaaatcgcattgagaaataaaacatgagcaaaccgattgttcttacttt 235
Query: 421 gtgcgaaaccattcctcccatgactcttcacaag 454
||||||||||||||||||||||||||||||||||
Sbjct: 234 gtgcgaaaccattcctcccatgactcttcacaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
