Query= MSMg01no416_i18.b1 MSMg01no416_i18.b1 CHROMAT_FILE:
MSMg01no416_i18.b1 PHD_FILE: MSMg01no416_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:12 2005
(547 letters)
>mm_chr5_131904633_131905579
Length = 947
Score = 681 bits (352), Expect = 0.0
Identities = 442/488 (90%), Gaps = 31/488 (6%)
Strand = Plus / Plus
Query: 64 tagaatcccccagggaggggctaggg---gcgtgactcagtggtagagcccctgcctag- 119
|||||| ||||| |||||||| | ||||| ||||||||||||||||||||||||
Sbjct: 287 tagaattccccaatgaggggct---gcatgcgtggctcagtggtagagcccctgcctaga 343
Query: 120 aatcccccagggaggggctgggggcgtggctcagtggtagagcccctgcctagaatcccc 179
||| |||||| || ||||| ||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 344 aat-ccccagtgaagggctagggacgtggctcagtggtagagctcctgcctagaatcccc 402
Query: 180 cagggaggggctgggggcgtggctcagtggtagagcccctgcctagaatcccccagggag 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 403 cagggaggggctgggggcgtggctcagtggtagagcccctgcctagaatccccc----ag 458
Query: 240 gggctgggggcgtggctcagtggtagagctcctgcctagggggctgttcttcaaatgatc 299
||| | || ||||||||| ||||||||||| ||||||||||||
Sbjct: 459 gggat-----------tc--------agctcctgcttagggggctgtccttcaaatgatc 499
Query: 300 agtacttcctgagcttctacaaggctctgggttccatcaccagcactgcacggaaataat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agtacttcctgagcttctacaaggctctgggttccatcaccagcactgcacggaaataat 559
Query: 360 agctaaatactctgactcttaacattgtagttaacttccattaactgtacaatttagtaa 419
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 560 agctaaatactctgactcttaacattgtagttaacttccattagctgtacaatttagtaa 619
Query: 420 aactcactgtggtagttccgcgcatacacagacgtgtcatgatgcctctctcaaatccct 479
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aactcactatagtagttccgcgcatacacagacgtgtcatgatgcctctctcaaatccct 679
Query: 480 tgtgtatgcttcttaaaattgattagacagaataacccctgcacctcccccactgttcag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtgtatgcttcttaaaattgattagacagaataacccctgcacctcccccactgttcag 739
Query: 540 gggaatgg 547
||||||||
Sbjct: 740 gggaatgg 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_i18.g1 MSMg01no416_i18.g1 CHROMAT_FILE:
MSMg01no416_i18.g1 PHD_FILE: MSMg01no416_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:12 2005
(473 letters)
>mm_chr5_132038230_132039102
Length = 873
Score = 826 bits (427), Expect = 0.0
Identities = 442/447 (98%)
Strand = Plus / Minus
Query: 1 caaagcaagtccatagttggcaagcatcaggaaatcaatgtggcatatactaagagctca 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 caaagcaagtccatacttggcaagcatcaggaaatcaatgtggcatatactaagagctca 391
Query: 61 aaagaaaattctggaatggctctatggatcagagtgaactttgggagtggtgcaggtcta 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aaagaaaattctggaatggcgctatggatcagagtgaactttgggagtggtgcaggtcta 331
Query: 121 agcaacaggtttctgactccctgcctatacagtagcgcccagaaataaaagaaaacaaag 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 330 agcaacaggtttctgactccctgcctatacagtagcacccagaaataaaagaaaacaaag 271
Query: 181 cattgtcctgatgagctgcccactctcccatcaccccattctgtcttacccatgaatgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cattgtcctgatgagctgcccactctcccatcaccccattctgtcttacccatgaatgag 211
Query: 241 cttgctctgctttttgagacagggtctcttgtagcctgtgctggccttgaactctctctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 cttgctctgctttttgagacagggtctcttgtagcctgtgctggccttgaactctctctc 151
Query: 301 tagccaaggataaccttgaatgtctcatcattctccctctgcctcttaattgttgggata 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tagccaaggatagccttgaatgtctcatcattctccctctgcctcttaattgttgggata 91
Query: 361 acagacatagaccaaccacactcagtgtatgcggtgtcgggtattgaacccagagctcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 90 acagacatagaccaaccacactcagtgtatgcggtgtcgggtattgaacccagggctcca 31
Query: 421 tgcatgctaaacaagcgctctacacac 447
|||||||||||||||||||||||||||
Sbjct: 30 tgcatgctaaacaagcgctctacacac 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
