BAC Information

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BAC

Clone NameMSMg01-416M12
Chromosome5 (Build37)
Map Location 87,785,321 - 87,785,817
singlet/doubletsinglet
Overlap geneLOC665476
Upstream geneTmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3
Downstream geneLOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416M12.T7 (MSMg01no416_m12.b1)MSMg01-416M12.TJ (MSMg01no416_m12.g1)
ACCAG512516AG512517
length720730
length of high quality
(start - end)		599 (17 - 615)495 (56 - 550)
definitionCHROMAT_FILE: MSMg01no416_m12.b1 PHD_FILE: MSMg01no416_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:29 2005CHROMAT_FILE: MSMg01no416_m12.g1 PHD_FILE: MSMg01no416_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:29 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCTCCTATTTCGAGAGGATCCGCGGAATTCTCCCTGCTTATATTGGCATG
TCAGTTCATGTTGTCATTATTCTGTTCTTTTTTAGGCACTATATTATTGA
GATTTCATGGATACATTTTTTCTGTTGTGCCTAGGGGACAGTGTGTAGCA
ACAGGTGTCCTCGAACTCTGTCTGACAACCTCCCCACCACCACCACCACG
ATTTTCACTGAGCCTTGGTGGTAGATTGCATTGCAGTAGTATCAGTTGAG
GTTAGAGTATCTCAGCATAATAAATCCACGGCCAACAACAATCTAAATGG
AAAAAAAAACAAAAATAAAAACAAAACTCACTAAAATCAGAATAGATACA
AGCCTGTCCATTACCGCTACTTCTTTTCAATGCTGTGTTTGAAGACCTAG
CTTGAGCAATAAGAAAGAGGAAGAAAATTAAAAGGATACAAATAGAAAAA
CAAGCAATTTTCTCCCTATTTGCAGGTATTATAATAAATAACAGGTCTTA
AAAATTCCATCAGAAAACATAAAAATAATCAGGAATTTCAGCATTAAAAG
CAATTTACGAAAATAAGTAGCCTTATATCATATAGTGTACAGTATATACT
GATAGCAAGCATGCTGGGGAAAGAATCATGGGAAAACTACAGNTCATAGT
AGGGTCCAAAATACAACTTAACCTAGGAACTGAAAGAATCCTTCATGAAA
CTTTTGAATATCTAAGAAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTATGTTAAAGCATTCATATATGGATCTTGGATTGCATATCATTGG
TAACATGTTTGTACTACATCAAGAGGCCTTGAAATTTTATTCCAAGAATT
CTATAAAAAGCTGGCAGCAGTAATTCCTATAACATTAGTTTGGGGTACTT
AAAGAGAAATCAATACCTGGTTTTCATTTGCTAACCAGGTTCACCAAATT
GGTGGGATCCAGTCAATGGGCCATTTCTTAGTACGTAAGGCAATAGCAAT
ATGATAAGACAATTAATCCCATATAGCGTCCTCACACAACAACATATAAC
CTCACACCCATGCACACATATACACACATAGACCTAAAGCAGTGATTCTG
GGTTATAAATATGAAGTCCATGTAAAGCATAGAAAATTGGAAATATATTT
ACACTTAAAGTCAATTAATTTCTTAACGTACACTTTTGAAGTATTAGGGA
GGAACAATGATTATAAATGTGAGAGGATCAGGGAGTTTGTTGTGAAATTG
TGTCTACTANAACTGTTAGAAGCTGCACTGTAAGTCTCAACCACTGAGTG
CTCAAACATGAGCTGAACAAGGGAAACAACACCAGATGTATTCTAGTGGG
CAGGGGACAGACCTGGGAGGCTTCACCTTAAAACAACTGTAGGTCATACT
AAAAGTGGGAGAACCTGCCTTGCCCAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_m12.g1 MSMg01no416_m12.g1 CHROMAT_FILE:
MSMg01no416_m12.g1 PHD_FILE: MSMg01no416_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:29 2005
         (495 letters)



>mm_chr5_87785121_87786017
          Length = 897

 Score =  789 bits (408), Expect = 0.0
 Identities = 475/498 (95%), Gaps = 4/498 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgttaaagcattcatatatggatcttggattgcatatcattggtaacatgtttgtact 60
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 tatgttaaagcattcatatttggatcttggattgcatatcattggtaacatgtttgtatt 260

                                                                       
Query: 61  acatcaagaggccttgaaattttattccaagaattctataaaaagctggcagcagtaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatcaagaggccttgaaattttattccaagaattctataaaaagctggcagcagtaatt 320

                                                                       
Query: 121 cctataacattagtttggggtacttaaagagaaatcaatacctggttttcatttgctaac 180
           |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 321 cctataacattagtttggggtatttaaagagaaatgaatacctggttttcatttgctaac 380

                                                                       
Query: 181 caggttcaccaaattggtgggatcc--agtcaatgggccatttcttagtacgtaaggcaa 238
           ||||||  |||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 381 caggtttgccaaattggtgggatccaaagtcaatgggccatttcttagtacgtaaggcaa 440

                                                                       
Query: 239 tagcaatatgataagacaattaatcccatatagcgtcctcacacaacaacatataacctc 298
           ||||||||||| |||||||||||| |  | |||||||| |||||||||||||||||||||
Sbjct: 441 tagcaatatgagaagacaattaatactgtctagcgtccacacacaacaacatataacctc 500

                                                                       
Query: 299 acacccatgcacacatatacacacatagacctaaagcagtgattctgggttataaatatg 358
           | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 agacccatgcacacatatacacacataaacctaaagcagtgattctgggttataaatatg 560

                                                                       
Query: 359 aagtccatgtaaagcatagaaaattgga-aatatatttacacttaaagtcaattaatttc 417
           |||||||||||||||||||||||||||| || ||||||||| |||||| |||||||||||
Sbjct: 561 aagtccatgtaaagcatagaaaattggacaa-atatttacatttaaagccaattaatttc 619

                                                                       
Query: 418 ttaacgtacacttttgaagtattagggaggaacaatgattataaatgtgagaggatcagg 477
           |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 620 ttaatgtacacttttgaagtattagggaggaacaatgattgtaaatgtgagaagatcagg 679

                             
Query: 478 gagtttgttgtgaaattg 495
           ||||||||||||||||||
Sbjct: 680 gagtttgttgtgaaattg 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 897
Length adjustment: 10
Effective length of query: 485
Effective length of database: 887
Effective search space:   430195
Effective search space used:   430195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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