Query= MSMg01no416_o18.b1 MSMg01no416_o18.b1 CHROMAT_FILE:
MSMg01no416_o18.b1 PHD_FILE: MSMg01no416_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:39 2005
(469 letters)
>mm_chr5_33385838_33386706
Length = 869
Score = 884 bits (457), Expect = 0.0
Identities = 466/469 (99%)
Strand = Plus / Minus
Query: 1 taactttatgttctgtgaatcttattcaacttttaaaaagaaagaaaggataaagtaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 taactttatgttctgtgaatcttattcaacttttaaaaagaaagaaaggataaagtaagg 610
Query: 61 ccatgagtactagggccctgtgaattgttctgtacagccagccgttgcctgcgtcatgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ccatgagtactagggccctgtgaattgttctgtacagccagccgttgcctgcgtcatgaa 550
Query: 121 cctgagctcttttcctaacgaagaaagtcgcagccactgaagagaagcagggctccccca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cctgagctcttttcctaacgaagaaagtcgcagccactgaagagaagcagggctcccccc 490
Query: 181 cacacacacccatcagacttccgaggtgtcagagcaggaaatggggctgagcagtagctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cacacacacccatcagacttccgaggtgtcagagcaggaaatggggctgagcagtagctc 430
Query: 241 ctcatcgctgccttccccgtgacctcactgaatgattcctctgagtttgtgaagtcaatt 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ctcatcgctgccctccccgtgacctcactgaatgattcctctgagtttgtgaagtcaatt 370
Query: 301 attcacctgctggccaaggcgctggtgtggcagaaaccacctctgactgctgtcccctga 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 369 attcacctgctggccaaggcgctggtgtggcagaaaccgcctctgactgctgtcccctga 310
Query: 361 cactgctggccttctatgggccagcacagtgcttggcgcctctcatgataactacactga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cactgctggccttctatgggccagcacagtgcttggcgcctctcatgataactacactga 250
Query: 421 atcccacaagcccctccccctacagtttccccccaaaaactaaagattc 469
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 atcccacaagcccctccccctacagtttccccccaaaaactaaagattc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_o18.g1 MSMg01no416_o18.g1 CHROMAT_FILE:
MSMg01no416_o18.g1 PHD_FILE: MSMg01no416_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:39 2005
(479 letters)
>mm_chr5_33234391_33235270
Length = 880
Score = 789 bits (408), Expect = 0.0
Identities = 465/498 (93%), Gaps = 27/498 (5%)
Strand = Plus / Plus
Query: 1 ctccattgtttgaaattttcttttagttaaaaaaacactgagtatatatttttttactga 60
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 191 ctccattgtttgaaaaattcttttagttaaaaaaacactgagtatata-ttttttactga 249
Query: 61 gtatatattttgtttgcttttcaacacaggattttgctctttagcccaggttggctttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 250 gtatatattttgtttgcttttcaacacaggattttgctctttagcccaggttggc-ttg- 307
Query: 121 actgactgtattcctgcctcatttttctgatttacaggattacagacatgaaacaccaca 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 308 actgactgtattcctgcctcatttttctgatttacaggattacagacataaaacaccaca 367
Query: 181 tcagagtttgctctgttcttcttatttattgttaaaatttttatataatatattttgatc 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 368 tcagagtttgctctgttcttcttatttattgttaaaattttt-----atatattttgatc 422
Query: 241 atgtttttctctctccctcaatccctacttccctatccaactgacttcattttctctttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 atgtttttctctctccctcaatccctacttccctatccaactgacttcattttctctttc 482
Query: 301 attaaaataaacataaaaaattaaaacaatg-aaaaaatcaatagaccaaa--------- 350
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 483 attaaaataaacataaaaaattaaaacaatgaaaaaaatcaatagaccaaaacaaacaaa 542
Query: 351 ---------aaaaaagcgccaaaacaaaacaaaagcacccacaaaaccgtggaatttgtt 401
|||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 543 caaacaaacaaaaaaccgccaaaacaaaacaaaagcaccaacaaaaccgtggaatttgtt 602
Query: 402 ttgtgtttggagcatgccctggaatatggttgatttaccaagtgacattccattggcgaa 461
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 603 ttgtgtttggagcatgccctggaatatggttgatttaccaagagacattccattggcgaa 662
Query: 462 aactgattttccctttgc 479
||||||||||||||||||
Sbjct: 663 aactgattttccctttgc 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 880
Length adjustment: 10
Effective length of query: 469
Effective length of database: 870
Effective search space: 408030
Effective search space used: 408030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
