NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTATCTCCTGCATAGCCTTCTATCCATCCCTGACTCTTCCAT
AGGGTCCACAACCTTGGCCTGATGTTTGGCTGTGGGTATCTGTATCTGTT
TCAGTCAGCTATGGGGTAGAACCTCTCAGAGGACAGTTATGCTTGGTTTC
TTTCTGTAAGCATAACAGAATATCATTAGTAGTGTGTCAGGGATTGGTGC
TTGCCCATGGGATAAGTCTCAAGTTGGGCAGGTCATTTGTTGACCATTCC
TTCAGTCTCTGCTCCATCTTTGTTTCTGCAATTTTAGACAGGACACATTT
TGGATCAAAAGTTTTGTGTGTGGGTTGGTGTTCTTATTACTCCACAGAGG
TCCTGCCTGGCTACAGGAGGTGGTCTCTTTAGGTTTCCTGTCTCCATTGT
TATGCATGTTGGCTAAGGTCACCTGCATTGACTCCTGGGAGCCTCCCCCA
TCCCAGGTCTCTGGGACTTCATAGAAACTTCTAGTACCCCCTCCTCAACC
TACACACACACTCAGCAGCTGCAATTTCCATTCTGTCTCTTGGNCCTCTG
GGGCTTTCTCCTGTCTCTCACCAGAACTGATCCTGCCTTCCAATTTATCT
TCCCCTCCCCTCTCCTAATCAGGTCTCTCCCTCCCTCCTTTTTCTACNCC
AAGGATCCTGTTGACTATTTTGGTCCCCCTTCTAAGTGAGAG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAACATGATGTTGGAAAACAC
AGCCTAAAGGTGGATTGCATCATGACCTAGGTTTATGCCCCAATTATGTA
AAAGAGCATATTATGAGCCAAGCAATATAATACAAAATTCATTCTTTCTC
TGTTCTAGACTATGGATGTGATGAACTGATTGAAGTTCTTGCTACCTTAA
TTTCACTTCACTGGTGGGGTGTGAACTAGGAAAAAAGAAAATTCTTTTGC
TTCTAAGTTACTTTTGTCAGAGTATTTTTGTCACAGCAAAATGACATGAA
ACCAAGAAAATTTTATTTAACAAATGAATACCAATGAGCCAACACAATTC
TGGCAATGAAATTATGCTGGAAAAAAACCCACATACACGAAATAAAATGA
TACAGGCCCTGTCCATAAACTGTTCACAATTCAATGGGAGTTATAGACAA
TATAAAGGTCAATAGGTAACTATATAAGAGAAATTTTGATAAATGCTACA
AACAAAGCTAATGTGTTACATTGGGATAATAATTGGGAGATTTTCTCTAA
CATATTAACTTGTGTTTTCACTAGAAGACTTTTATTTGCCACTTTGTATT
GGTATGAGTTATTGAGAGAGAACTACCACGAAAAAATGGAAGTGATGAAC
TTACTATGAAAGAATGGATCATGCCCGAATATTATATCCAACATAATTTC
C

Query= MSMg01no417_b13.g1 MSMg01no417_b13.g1 CHROMAT_FILE:
MSMg01no417_b13.g1 PHD_FILE: MSMg01no417_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:52 2005
         (537 letters)



>mm_chr5_49242278_49243214
          Length = 937

 Score =  735 bits (380), Expect = 0.0
 Identities = 440/460 (95%), Gaps = 3/460 (0%)
 Strand = Plus / Minus

                                                                       
Query: 79  catattatgagccaagcaatataatacaaaattcattctttctctgttctagactatgga 138
           ||||||||||||||||||| ||||| || ||||||||| |||||||||||||||||||||
Sbjct: 937 catattatgagccaagcaacataatgcagaattcattccttctctgttctagactatgga 878

                                                                       
Query: 139 tgtgatgaactgattgaagttcttgctaccttaatttcacttcactggtggggtgtgaac 198
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 tgtgatgaactggttgaagttcttgctaccttaatttcacttcactggtggggtgtgaac 818

                                                                       
Query: 199 taggaaaaaagaaaattcttttgcttctaagttacttttgtcagagtatttttgtcacag 258
           ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 817 taggaaaaaagaaaactcttttgcttctaagttacttttgtcagagta-ttttgtcacag 759

                                                                       
Query: 259 caaaatgacatgaaaccaagaaaattttatttaacaaatgaataccaatgagccaacaca 318
           ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 758 caaaatgacatgaaatcaagaaaattttatttaacaaatgaatcccaatgagccaacaca 699

                                                                       
Query: 319 attctggcaatgaaattatgctgg-aaaaaaacccacatacacgaaataaaatgatacag 377
           |||||||||||||||||||||||| ||||||||||||||| || || |||||||||| ||
Sbjct: 698 attctggcaatgaaattatgctggaaaaaaaacccacatatactaagtaaaatgatatag 639

                                                                       
Query: 378 gccctgtccataaactgttcacaattcaatgggagttatagacaatataaaggtcaatag 437
           |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 638 gccctgcccataaactgttcacaattcaatgggagatatagacaatataaaggtcaatag 579

                                                                       
Query: 438 gtaactatataagagaaattttgataaatgctacaaacaaagctaatgtgttacattggg 497
           |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
Sbjct: 578 gtaactatataagagaaattttgataaatgttacaaataaagctaatgtgttacattgtg 519

                                                   
Query: 498 ataataattgggagattttctctaacatattaacttgtgt 537
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 518 -taataattgggagattttctctaacatattaacttgtgt 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)