BAC Information

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BAC

Clone NameMSMg01-417C09
Chromosome5 (Build37)
Map Location 132,868,671 - 132,869,150
singlet/doubletsinglet
Overlap geneAuts2
Upstream gene4930563F08Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417C09.T7 (MSMg01no417_c09.b1)MSMg01-417C09.TJ (MSMg01no417_c09.g1)
ACCAG512798AG512799
length744744
length of high quality
(start - end)
366 (74 - 439)481 (80 - 560)
definitionCHROMAT_FILE: MSMg01no417_c09.b1 PHD_FILE: MSMg01no417_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:56 2005CHROMAT_FILE: MSMg01no417_c09.g1 PHD_FILE: MSMg01no417_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGTCAAXXXXXXXXXXXXXXXXXXXXXXXNCACTTCAAAAGAGGATCCG
CGGAATTCAAGTGTTCCCAAGACTAACATTTTCTGAAACTACAGGTACTG
ATGATCAAACTCAGGTCCTATGCTTATGAAGCAAACATTTACCAACTGAA
CCCTCTCTCCAAACCCTTTTCTTTTGCTTTTATAAAGAATTTTACCTGGG
CATAGTGGTGTATGCCTTTAATACTAGCGTTTGGGAGGCAGGGGCAGGCA
GATCTCTGTAAATCCAAAGCCAGCCTGGTCTATATATAGAGTTCCAGGAC
ACCCAGGGTTATCTGGTGAGACCTTGTCTAAAATAAGTAAGTAAGTAAAT
AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAGGAGGTGGC
ATACAGCTAGTGTTTTAATTACTGGAGAGGCTGAGGCGGGTAGGAATCAC
ATGATCAAGGCCATATGAGTTCAAGACCAGTCTGGACAATTTATTAAGGC
ACTTTCCAATAACAACAATAACAACAACAACAAAGCCTAAAGAGGGCCGA
ACATATAGCTGACCTCGAGAGCACTTGTTGACACTGCTCAAGGCCCTGGG
TCTCCCTCATACTACTACTGAGGTTTTTTAAAAAATGATCTCCGTACTTG
ATTCTATACCTCGATGCTCGTATAGCTCCTTTTGCGTATCGCGATTGTCA
CCTGCCTGCTAATGAGATAAGAACTACCTCTACTATCCTGTTTT
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCATGCAGGAGTTAGATC
TCTGACCTCGATGAGTCCCTCAAGAAAGCAAGCCATGGTCTGGAAAGAAA
CAATGAGAGTCCATTAGGAGAGCTTCTCTCTAGAGTGTGCAATTACAAGG
CCCCTACTCTTGTGATGAAATAGGAGCTAGATTTTTTTTTTTCAAAAATA
CCCAATGAGATTGTGACAGTGTAAGTGGATTTCACGCAGAATATAATTTG
TGTATTTTAGCCAGGTTTTTATTTGATGAAAGATAATTAGCAACTTCATG
AAAGAAAAGGGTGGTTTTGATTTTGTTTACTAATAAAATAAACACTTTGT
TTATATTTCATTTACTAACCAAGAAATAAAAACTGCAAATATGCAAACAA
ACTTTAAAGGCCTCTATCTATATTATGCTCACCTTGATAATGAAAGGCAA
AATGAACCACAGAGCCTGGAGAGATGGCTCAGCAATTCATAGCTTGTACT
GTTTTTGCTGATGGACTGAGTTGAGGTTACAGCCCTAACTCAGTTGCATG
AAGCTCTCATCCTATGTAACTTGAGCTCCATGCGTGTTCAACACCCTCTT
CTGGCCTCCTAAGACAACTGCCCACTGACCCTGATATACACGCGCACGCG
ATTTTTCAAACAATCATGCTTTCCCGATACGTCCTGACTACACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_c09.g1 MSMg01no417_c09.g1 CHROMAT_FILE:
MSMg01no417_c09.g1 PHD_FILE: MSMg01no417_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:56 2005
         (481 letters)



>mm_chr5_132868471_132869350
          Length = 880

 Score =  876 bits (453), Expect = 0.0
 Identities = 474/481 (98%), Gaps = 1/481 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgcatgcaggagttagatctctgacctcgatgagtccctcaagaaagcaagccatggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgcatgcaggagttagatctctgacctcgatgagtccctcaagaaagcaagccatggt 260

                                                                       
Query: 61  ctggaaagaaacaatgagagtccattaggagagcttctctctagagtgtgcaattacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggaaagaaacaatgagagtccattaggagagcttctctctagagtgtgcaattacaag 320

                                                                       
Query: 121 gcccctactcttgtgatgaaataggagctagatttttttttttcaaaaatacccaatgag 180
            |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 321 ccccctactcttgtgatgaaataagagctagatttttttttt-caaaaatacccaatgag 379

                                                                       
Query: 181 attgtgacagtgtaagtggatttcacgcagaatataatttgtgtattttagccaggtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 attgtgacagtgtaagtggatttcacgcagaatataatttgtgtattttagccaggtttt 439

                                                                       
Query: 241 tatttgatgaaagataattagcaacttcatgaaagaaaagggtggttttgattttgttta 300
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taactgatgaaagataattagcaacttcatgaaagaaaagggtggttttgattttgttta 499

                                                                       
Query: 301 ctaataaaataaacactttgtttatatttcatttactaaccaagaaataaaaactgcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctaataaaataaacactttgtttatatttcatttactaaccaagaaataaaaactgcaaa 559

                                                                       
Query: 361 tatgcaaacaaactttaaaggcctctatctatattatgctcaccttgataatgaaaggca 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 560 tatgcaaacaaactttaaaggcctctatttatattatgctcaccttgataatgaaaggca 619

                                                                       
Query: 421 aaatgaaccacagagcctggagagatggctcagcaattcatagcttgtactgtttttgct 480
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 620 aaatgaaccacagagcctggagagatggctcagcaattcatagcttgtgctgtttttgct 679

            
Query: 481 g 481
           |
Sbjct: 680 g 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 880
Length adjustment: 10
Effective length of query: 471
Effective length of database: 870
Effective search space:   409770
Effective search space used:   409770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)