BAC Information

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BAC

Clone NameMSMg01-417D03
Chromosome5 (Build37)
Map Location 14,810,810 - 14,811,425
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957, Pclo
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417D03.T7 (MSMg01no417_d03.b1)MSMg01-417D03.TJ (MSMg01no417_d03.g1)
ACCAG512834AG512835
length748758
length of high quality
(start - end)
620 (50 - 669)138 (84 - 221)
definitionCHROMAT_FILE: MSMg01no417_d03.b1 PHD_FILE: MSMg01no417_d03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:00 2005CHROMAT_FILE: MSMg01no417_d03.g1 PHD_FILE: MSMg01no417_d03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTCATATTTTTACTATGAATGAAAAAAATTTACTGGGAGA
AACATCTCCATGTTTAGACTCAGATAGTATGTCATTTTCCCACAGTTTTT
GTTATTTGCACAGCGTTACAACAGTGCCGTGGCAAACAAAGGGGAATTTG
GGAGACTCAGAAAATATTTTAGGAAACTCTGGTACTAGTGATAACAGAAT
TAAATAAATTGGGTAATTGCTTACCTATTACTAGTCAATAACCAGATAGT
CTCCATAGAAGGGAAATGCATGACCGAATAGATAGTTCACATGTGGCTTG
ATCAATTCTCCTGGTATTTTAATTTCTGATTTCAATCTAAAGGTGTTTCT
TTCCTTTAGGTATTTTGTAATTGATATGGGGTCTTGTTTCAGCATTTTCA
TGAGTTTGAGTTTTGTTTGTATGAGACCATGTGTCCATAGGGACATTTGT
GCTGTACTTTATGCACTAGGAGCATAGCCTTCAAACTGGGCAGAACTCTA
GCCTGAAGTGAGTCAGGGAGGGGACTGCCATGCACAAAGAAGGAAGAGAA
GAAAGACAGTGTTGGCTCACACTTTGTGAGGAGGGCATTATTAATTTGAA
GTTCTTGATGTTCATCCCTTGCCAGAGAGAGTGACTTTTTTCCTTTCTGA
TCTATATATACTCACTCTGTANAATACGCTAATCTGAGTTTGTGTGTG
AATNGNGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGATGATGTCAATA
GCTTATTACCATGTTAAAAAATGACCAAATTGGACACGCAGACTTTATAT
GCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAG
GGGACTGGGGGTGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGN
NNNNNNNNNNNGGNNGGNGGNGGGGGGGGGGGGGGGGGGGGNGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGTTTTTTTTTGGTGGGGGGGGGTGTTGTGT
GGGTTGGGGTGGTGTTGTTTTGTGGTGGTGTGGGGGGGGTGGTGGTGTGG
NGGGGGTTTTTTTGGGTGTGGTTGTTTGGTGTTTTTTGGGTTGGGTTTTT
GTTGGGTTTTTGGTTTGTTTTTTTTTGTGGTTGGGGGTTTTGGTTTGTGT
TTGTTGGTTTTTGTNGTTGNGTGTTTTTTGTTTTTGTTTTGCCTTTTTTT
TTTTTTTTTTTTGTGTTGTGTTTTTCTTTTGTGTGGNGGTTTTGTCGCTT
TGTGTTTTGTTGTTTGTGTGTTGTTTTTCTTTTTTTGTGCGTTGGTTTTT
GTTCGTCTTCCTCTCTCCCCCCTTTTTTTCTCNCGTTCTTGCCTTGTCCT
CCGTCTCTTTTCCCTTCTCTCCTTTTTGTTCTTGTGTGTTTCGCTGTTTC
TCTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_d03.b1 MSMg01no417_d03.b1 CHROMAT_FILE:
MSMg01no417_d03.b1 PHD_FILE: MSMg01no417_d03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:00 2005
         (620 letters)



>mm_chr5_14810606_14811625
          Length = 1020

 Score = 1183 bits (612), Expect = 0.0
 Identities = 615/616 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttcatatttttactatgaatgaaaaaaatttactgggagaaacatctccatgt 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gaattccttcacatttttactatgaatgaaaaaaatttactgggagaaacatctccatgt 761

                                                                       
Query: 65  ttagactcagatagtatgtcattttcccacagtttttgttatttgcacagcgttacaaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 ttagactcagatagtatgtcattttcccacagtttttgttatttgcacagcgttacaaca 701

                                                                       
Query: 125 gtgccgtggcaaacaaaggggaatttgggagactcagaaaatattttaggaaactctggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gtgccgtggcaaacaaaggggaatttgggagactcagaaaatattttaggaaactctggt 641

                                                                       
Query: 185 actagtgataacagaattaaataaattgggtaattgcttacctattactagtcaataacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 actagtgataacagaattaaataaattgggtaattgcttacctattactagtcaataacc 581

                                                                       
Query: 245 agatagtctccatagaagggaaatgcatgaccgaatagatagttcacatgtggcttgatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agatagtctccatagaagggaaatgcatgaccgaatagatagttcacatgtggcttgatc 521

                                                                       
Query: 305 aattctcctggtattttaatttctgatttcaatctaaaggtgtttctttcctttaggtat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aattctcctggtattttaatttctgatttcaatctaaaggtgtttctttcctttaggtat 461

                                                                       
Query: 365 tttgtaattgatatggggtcttgtttcagcattttcatgagtttgagttttgtttgtatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tttgtaattgatatggggtcttgtttcagcattttcatgagtttgagttttgtttgtatg 401

                                                                       
Query: 425 agaccatgtgtccatagggacatttgtgctgtactttatgcactaggagcatagccttca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 agaccatgtgtccatagggacatttgtgctgtactttatgcactaggagcatagccttca 341

                                                                       
Query: 485 aactgggcagaactctagcctgaagtgagtcagggaggggactgccatgcacaaagaagg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aactgggcagaactctagcctgaagtgagtcagggaggggactgccatgcacaaagaagg 281

                                                                       
Query: 545 aagagaagaaagacagtgttggctcacactttgtgaggagggcattattaatttgaagtt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aagagaagaaagacagtgttggctcacactttgtgaggagggcattattaatttgaagtt 221

                           
Query: 605 cttgatgttcatccct 620
           ||||||||||||||||
Sbjct: 220 cttgatgttcatccct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)