BAC Information

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BAC

Clone NameMSMg01-417I07
Chromosome5 (Build37)
Map Location 25,342,935 - 25,343,536
singlet/doubletsinglet
Overlap geneActr3b
Upstream geneRheb, Prkag2, Galntl5, E130116L18Rik, Galnt11, Mll3, Gm443, Xrcc2, LOC435835
Downstream geneLOC100038949, EG272714
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417I07.T7 (MSMg01no417_i07.b1)MSMg01-417I07.TJ (MSMg01no417_i07.g1)
ACCAG513079AG513080
length736691
length of high quality
(start - end)
603 (72 - 674)181 (78 - 258)
definitionCHROMAT_FILE: MSMg01no417_i07.b1 PHD_FILE: MSMg01no417_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:25 2005CHROMAT_FILE: MSMg01no417_i07.g1 PHD_FILE: MSMg01no417_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACCCTTCCTGAAGCCTGGGTGCAGCAGGGCCGGAAGGAGGTGG
CAGTGTGAGACATCCGTCATCCTGCTTTGCCACTAGGTTGGAAGGTGGGA
AAAGATCCTACTTGTTCTATTGTCAGGAAGATGTGACTGCATCTTGATGT
GCTCGCAGTTGGCTTTTTCTACAACTAGTGGCTTGAATTGGGTCTAGTAT
AATAATTATCTTAGTGCTTTTAAGTCAGAACAGCAGGATGCAGGGTGAAC
AAGCTGTGTATATTATTTATTGATGTTGAGTAGTTCTGACATCTTCAATA
GGTGAAACAGAAAATTAGAAAACATATCTACCAGTGGTGTTTTATCTTTG
TTCTCTCCTTTCTCTCCCTTCAGTACTAGGGATAGAATGCAGGTCATTGT
AGGCAAGCACTCTGCTAGTGAGCTACATCTCAACCCGGCATCCTTTACAA
ATAGTCCCTTTCCAGTGAAACCCAGATGCAAGTCCAAGATGCGAGCAGAG
GGAAGGCAGTGGTTTAGATTTGGGCCGGGTCATGGGTTTAACAGTTACAG
AACGTTTAAACCTACCCACAACATTTAGCTGTGCTTCCTGCTAATGTACT
CTANAACAGTAAGATTTCTTTCCGTCTTAGTGGGAAAGGAAGCCCGGTGT
AAACTACTAGTCATGGCTGAATTCAGGGATTTTAAG
NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATTACTGCTAACATATAGCACT
CTATAACACAGATTCATTCATGATCCCGTGAACCAGATACTGAGTAATAT
ACAGCCATTGTTCTAGAGCTGCTGCGGATATAAAAACACTCAGAAAGGAA
TATAAAATAAATCAGGAAGGCCAGAGCCATGTGCCTCAGTTTACTTGCAA
TAGAGCTATCAGNTGAATTGAGGAGAACAATGGCTTCCCTTTGGTTCTGG
CCTGAAAGGGTCAGAGCCGTTAACTGGGAGAAAGGTCAGGGGTCGTTCCT
CCTGAAAGGGAGGGATGTCTAAACATGACTTTCTGTGAGCCAGAGTTTTT
CCTTGTTCCTAGTCAAGAGTTAATATTTACCCTGAGAAGGAAGATGTCCC
TTGGGGCCTTCCAATTAAAGTTTCTTCTTCTGAAATTCCTTCTTGTGAAG
AAAAAAAGGAACCCCCAAATTGGAAAAAAATTGGTTTTGGCCCAAAGGCC
CCTAAGTAAAAAAGGGGTTTTTTTTTGGAGACAAAAAATTTTTGGGNNAA
AAAACAACCCCCCGGGGGGTTTTTTTACGCGGGGGGAAAAAAAACCCCCA
ACAAGGATTTTTTGTTCCACTCNNCCGCCCACCCCACAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_i07.b1 MSMg01no417_i07.b1 CHROMAT_FILE:
MSMg01no417_i07.b1 PHD_FILE: MSMg01no417_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:25 2005
         (603 letters)



>mm_chr5_25342735_25343737
          Length = 1003

 Score = 1098 bits (568), Expect = 0.0
 Identities = 594/603 (98%), Gaps = 1/603 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgggtgcagcagggccggaaggaggtggcagtgtgagacatccgtcatcctgctttgcc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ctgggtgcagcagggccggaaggaggtggcagtgtgagacatctgtcatcctgctttgcc 260

                                                                       
Query: 61  actaggttggaaggtgggaaaagatcctacttgttctattgtcaggaagatgtgactgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaggttggaaggtgggaaaagatcctacttgttctattgtcaggaagatgtgactgca 320

                                                                       
Query: 121 tcttgatgtgctcgcagttggctttttctacaactagtggcttgaattgggtctagtata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgatgtgctcgcagttggctttttctacaactagtggcttgaattgggtctagtata 380

                                                                       
Query: 181 ataattatcttagtgcttttaagtcagaacagcaggatgcagggtgaacaagctgtgtat 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaattatcttagtgcttttaagtcagaacagcaggatgcagggtgaacaagctgtgtat 440

                                                                       
Query: 241 attatttattgatgttgagtagttctgacatcttcaataggtgaaacagaaaattagaaa 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attatctattgatgttgagtagttctgacatcttcaataggtgaaacagaaaattagaaa 500

                                                                       
Query: 301 acatatctaccagtggtgttttatctttgttctctcctttctctcccttcagtactaggg 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct: 501 acatatctaccagtggtgttttatctt-gttctctcctttctctcccttcagtactagga 559

                                                                       
Query: 361 atagaatgcaggtcattgtaggcaagcactctgctagtgagctacatctcaacccggcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 560 atagaatgcaggtcattgtaggcaagcactctgctagtgagctacatctcaacccagcat 619

                                                                       
Query: 421 cctttacaaatagtccctttccagtgaaacccagatgcaagtccaagatgcgagcagagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 620 cctttacaaatagtccctttccagtgaaacccagatgcaagtccaagattcgagcagagg 679

                                                                       
Query: 481 gaaggcagtggtttagatttgggccgggtcatgggtttaacagttacagaacgtttaaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaaggcagtggtttagatttgggccgggtcatgggtttaacagttacagaacgtttaaac 739

                                                                       
Query: 541 ctacccacaacatttagctgtgcttcctgctaatgtactctanaacagtaagatttcttt 600
           |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 740 ctacccacaacatttaactgtgcttcctgctaatgtactctaaaacagtaagatttcttt 799

              
Query: 601 ccg 603
           |||
Sbjct: 800 ccg 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)