BAC Information

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BAC

Clone NameMSMg01-417I21
Chromosome5 (Build37)
Map Location 136,139,864 - 136,140,218
singlet/doubletsinglet
Overlap genenone
Upstream geneLimk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2
Downstream genePor, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417I21.T7 (MSMg01no417_i21.b1)MSMg01-417I21.TJ (MSMg01no417_i21.g1)
ACCAG513107AG513108
length741765
length of high quality
(start - end)
523 (76 - 598)355 (75 - 429)
definitionCHROMAT_FILE: MSMg01no417_i21.b1 PHD_FILE: MSMg01no417_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:28 2005CHROMAT_FILE: MSMg01no417_i21.g1 PHD_FILE: MSMg01no417_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGATTCATGGATATTCCTGAGAAGGCAGCTCAATTAGTAAAGTCCTGGTC
TTGCAAGCACAAGGACTTAAGTTCAGCCCCAGAATCTATGTGAAAAAGAG
CCAAGGGTGGCGGTATACGCTTGGAATCCCAGCAATGGGGAGGCAGAGAC
TGCAGATGGTGTCTTATGGGGCTCATTAACTACCTAGTCAGAGATCCTGT
CTCGAAGAAAAAGGTGGGAGGGGCAGGGCAGGTGGCTCAGTGAGGAAAGG
TGCTTGCTGCGAATCCTGACGATTCTTACTCAGTCCCTGAGACCTGCATG
GGGAAGGCAGAGAATGGATTCCCAAAAGTTTCCCTGTACCTTTTCATGGT
CCGCCCCCTCCCATGCCCATTACACTGCCCCCACTGGCCTTGAACCCATG
GGTTTGAGCGCTCTTCCTGCTTCCGCCTCCTGAGTAGCTGGGACTCCGGC
ACACATCAGTAGTCTCAGTTTCCTTTCCTGGTGCTGGGATAACATTCTGA
GTAAACAACCCAAGGGAGGAAGGCTTATTCTGGCTCACAGATTCATCACA
GATGGATGGCACAGCGACGAGAGAACTTACCTCCACACTGTATGCACAGT
CGGTCGCAGGGATCGATGAGCTACCGTGTACACGCTGCCGCTCAGTTCCC
TGTCCCCAGTTCATCTAGTCCAGGATCCCCTGCCGAGGTAN
TCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGCTGCAGCAAAGACATGGATCTG
GTTTTACCTGAGCAAAGGTGGCTAAGGTTTAAGGGAGTGCCTCCACTGCC
GGTGGCTGGCTGAGTCCCCTGCTAGGTTGCTGTGGACAACCCCACTGTCA
TATTCACAGGTGGTTCCTTCAGTAGTGAGGATGAGGTCATTAAAGTTAGA
GGAGCACATATGATTACTGATAAGTTATTTCTTCTCTGGTGAAAAGAGCC
AATTCAAGCCAGCTTAGACTATGTAAAGGCAGGTTTATTGGGATGCTGCA
GGCGAGTTCACTGGTCCCAATGATGGAAGTCAGCATGGGGAGAGGGGGCG
GGGAAGGGGAGAGAAAAGGGTGTGCAGGTGGGGTGCGCTCTTTCCCTTTT
TCCTTTCCTCTCTCTTTCCCCCCTCTCTTTTTTTTCCCTCCCTTTCCCTC
TTCTCCCTTCCTTTTTCTTCCTTTCTCTCCTTCTCCCTCTCTTTTCCCCC
CCCCCCGTGCCCTTTCCTTCTTTCCCTTTCCCTTTCTCCTTTTCCTCCCC
CCTTCCCTTCCCCTTTCTTCCCTTCCTTTCCCCTTTTCCCTTTCTTTTCC
TCTCCTCCCCTTTTTCCCCCTTTTTTCCCCCCCCCCCCTTCCCTTTTTCT
TTTCTTTCCTCTCCTTTTTTTCCTTTCCTTCCTTCCTCTTCCCCGTTTCT
TCCCTTCTTTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_i21.g1 MSMg01no417_i21.g1 CHROMAT_FILE:
MSMg01no417_i21.g1 PHD_FILE: MSMg01no417_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:28 2005
         (355 letters)



>mm_chr5_136139826_136140580
          Length = 755

 Score =  671 bits (347), Expect = 0.0
 Identities = 353/355 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgctgcagcaaagacatggatctggttttacctgagcaaaggtggctaaggtttaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tttgctgcagcaaagacatggatctggttttacctgagcaaaggtggctaaggtttaagg 334

                                                                       
Query: 61  gagtgcctccactgccggtggctggctgagtcccctgctaggttgctgtggacaacccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gagtgcctccactgccggtggctggctgagtcccctgctaggttgctgtggacaacccca 274

                                                                       
Query: 121 ctgtcatattcacaggtggttccttcagtagtgaggatgaggtcattaaagttagaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctgtcatattcacaggtggttccttcagtagtgaggatgaggtcattaaagttagaggag 214

                                                                       
Query: 181 cacatatgattactgataagttatttcttctctggtgaaaagagccaattcaagccagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 cacatatgattactgataagttatttcttctctggtgaaaagagccaattcaagccagct 154

                                                                       
Query: 241 tagactatgtaaaggcaggtttattgggatgctgcaggcgagttcactggtcccaatgat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 153 tagactatgtaaaggcaggtttattgggatgctgcaggcgagttcactggtctcaatgat 94

                                                                  
Query: 301 ggaagtcagcatggggagagggggcggggaaggggagagaaaagggtgtgcaggt 355
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  ggaagtcagcatagggagagggggcggggaaggggagagaaaagggtgtgcaggt 39


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)