Query= MSMg01no417_l02.b1 MSMg01no417_l02.b1 CHROMAT_FILE:
MSMg01no417_l02.b1 PHD_FILE: MSMg01no417_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:39 2005
(549 letters)
>mm_chr5_107870902_107871850
Length = 949
Score = 1042 bits (539), Expect = 0.0
Identities = 542/543 (99%)
Strand = Plus / Minus
Query: 5 gaattctgaccttcatgcttcaacagcaagcactttcctgactgagtcatctccctagcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gaattctgaccttcatgcttcaacagcaagcactttcctgactgagtcatctccctagcc 661
Query: 65 ccagattcactctttaattagggagccgcttttacccacaagaatggatcatttaaggcc 124
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 660 ccagattcactctttaattagggagccgcttttacccacaagaagggatcatttaaggcc 601
Query: 125 taatcacaatttaaggacccactgacagttaacaacaaaccaatgacagttatgaattcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 taatcacaatttaaggacccactgacagttaacaacaaaccaatgacagttatgaattcc 541
Query: 185 agcttgtactttgaaaagaacaaatattcaaatcatagcataacctatataaagcacttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 agcttgtactttgaaaagaacaaatattcaaatcatagcataacctatataaagcacttc 481
Query: 245 agactcctattgaagtttagttactaagcattttgacctatgtactaagaacataaagac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agactcctattgaagtttagttactaagcattttgacctatgtactaagaacataaagac 421
Query: 305 cactaaaggctaaaacataatgcctgcccctctggagttttaagcacagtagagaaagac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cactaaaggctaaaacataatgcctgcccctctggagttttaagcacagtagagaaagac 361
Query: 365 agatctgaaaattaaaaggcacgatacattcaacagcaaatacactccttgaccctgacc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agatctgaaaattaaaaggcacgatacattcaacagcaaatacactccttgaccctgacc 301
Query: 425 cccaatcagcccagacagacaccacacacgactacaagatatgctgggtgaccagatgga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cccaatcagcccagacagacaccacacacgactacaagatatgctgggtgaccagatgga 241
Query: 485 agcaagttgtcctctgagaggctctattcagcagctgactcagacagatacagacaccca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agcaagttgtcctctgagaggctctattcagcagctgactcagacagatacagacaccca 181
Query: 545 cgg 547
|||
Sbjct: 180 cgg 178
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_l02.g1 MSMg01no417_l02.g1 CHROMAT_FILE:
MSMg01no417_l02.g1 PHD_FILE: MSMg01no417_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:39 2005
(434 letters)
>mm_chr5_107703785_107704619
Length = 835
Score = 775 bits (401), Expect = 0.0
Identities = 428/439 (97%), Gaps = 5/439 (1%)
Strand = Plus / Plus
Query: 1 agactggcggggccagtaagccacccaaactattcagaaccaggggttttagtcgtgatg 60
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 agactggcagggccagtaagccacccaaacgattcagaaccaggggttttagtcgtgatg 260
Query: 61 gtgcaaggattccagcagggt-ctgttgaataagcagggaccggagtgggtgctctaggt 119
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcaaggattccagcagggttctgttgaataagcagggaccggagtgggtgctctaggt 320
Query: 120 cactgggataaaacactgactgagagccacttgagaaggaattggcttatttgactttca 179
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactaggataaaacactgactgagagccacttgagaaggaattggcttatttgactttca 380
Query: 180 ggtttcagtcaatcgcggaggcaaacaaaggtaggaactctaggaaggcgattcaacacc 239
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtttcagtcaatctcggaggcaaacaaaggtaggaactctaggaaggcgattcaacacc 440
Query: 240 gcttcccggcttgcttgccatggcttccttgactggctggctttcttt----tccttcct 295
||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 441 gcttcccggcttgctcgccatggcttccttggctggctggctttctttcttttccttcct 500
Query: 296 ttctttcaatatttatttatttatctatttatttaatgtatgtgagtatactgttgctgt 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctttcaatatttatttatttatctatttatttaatgtatgtgagtatactgttgctgt 560
Query: 356 cttcagacacaccagaagagagcatcagttcccattacagatggatgtgagccaccatgt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttcagacacaccagaagagagcatcagttcccattacagatggatgtgagccaccatgt 620
Query: 416 ggttgctgggaattgaact 434
|||||||||||||||||||
Sbjct: 621 ggttgctgggaattgaact 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 835
Length adjustment: 9
Effective length of query: 425
Effective length of database: 826
Effective search space: 351050
Effective search space used: 351050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
