BAC Information

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BAC

Clone NameMSMg01-418I11
Chromosome5 (Build37)
Map Location 143,421,159 - 143,421,575
singlet/doubletsinglet
Overlap geneLOC100038888
Upstream geneSdk1, LOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525
Downstream geneZfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418I11.T7 (MSMg01no418_i11.b1)MSMg01-418I11.TJ (MSMg01no418_i11.g1)
ACCAG513844AG513845
length758737
length of high quality
(start - end)
406 (48 - 453)121 (53 - 173)
definitionCHROMAT_FILE: MSMg01no418_i11.b1 PHD_FILE: MSMg01no418_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:45 2005CHROMAT_FILE: MSMg01no418_i11.g1 PHD_FILE: MSMg01no418_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:45 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTTGTCTCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATC
CGCGGAATTCCTTTCTATACGGTTCCTGTCACTAATTCATTTATTTCTAT
TAAGGAGTAGTAAGTATTCTATGGCATGGATTTTGCATACCTTGCAAAAC
AGTTTCCAACTGTTTGGGGGGGGTTCATATAAAGCATATATATATAAAAA
ATATTTCTTCAAATGTTATCGAAGGCTAGCTATTGAAAAGGATCTCAGTG
TTCATCAGGGGTGAGGCCTGCATTAAATAAATTGTAATGCAGCCCATAAC
ACAATATGCAGAAATGCTGGAAAGAAGACGCACATTCGTTGGAACAGGAG
ACACACACATTCTAGCACTCTCGTGAGTCATACTCCCTGTGTCTCTGTTT
GCCTGCCTGCAGAGTGGGAGAACTGAAGCCCGTCATGGTGGCACCCACTT
AGACTCCAGCACTTGAGTGGCAGAGGTAGAAGAATCCAGGCCAGCCAGTC
TGAACTAACACATGTAAGAGACATCGACATGGCCTACTTTGTACACCTAT
CGCTAAAACATGCTCGTTTAACCATTTTTTACCATAGCCTGTGCTTGCTG
TTCATTGCTTCTCGAACTTCCATTCTTCTCTTACCTTTTCACTTCCTTCC
ATTTCTCCTTCTTTTTTCCCTCGTTCTTATATCTTCCTTTTGCACATATC
TGTCTTTCCTCCCCTCTCTTTTCTTTTTTTCCTTCCTTCCTTAATTCCCT
TTTTTTTG
GCCGGTACGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XAGGAGGATTAGCTTACCTGAGTCTGTAGAAAGCCATGTTTGGTTTTTTA
TTTGTTTGTTGTTTTTAAAGTTTTATTTTATTATTTATTTTATGCATATA
AGTACACCACCATTGCTGTCTTCAACACATCAGAAGAGCGCATCAGACCC
CATTACAAATGGTTGTGAGCCACCATGTGGTTGCTGGTAATTGAACTCAG
GACCTCTGGAATAGCAGTTGGTGCTCTTAACCACTGAGCCATCTTCTTTA
GTCCAAGGTCAGGTTCTTGATGAAAATGCTAGAATCAATTGTCCCTGCTG
CTGCATTGCCCAGTTAAATACCTGTGTGTGTGCCATGATCCACTCTCTAA
TAACTTTGAGCTATCTATTTGTTCTCTCCATTATAGACCCTCTACCAGCG
TCTTCTATTTTCATTATCTTAATATTCCAGCCTTCACTTCTCAGTTTTTG
CTTCTCCTTTTCTGCCTTTTATTCCCCACATCTTTTTCTCCCCTTCCTTC
ATTTGCCTATTCCTACCCTTTTTCCTTTTTTTTTTTCATCCCCTCACCCC
TCCTTTTCCTTATGTTTTTCTTCTCCATAGCCCCTTGTTTTCCCTCTCCT
CTTTCTTCCCTCTTATCTCTTTTTCTTCCTCTTTTTTCCTTCTCCGCCCT
TCCTTCTTCCCTATTTCCCCCCTTTTTTCCCCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_i11.b1 MSMg01no418_i11.b1 CHROMAT_FILE:
MSMg01no418_i11.b1 PHD_FILE: MSMg01no418_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:45 2005
         (406 letters)



>mm_chr5_143420800_143421605
          Length = 806

 Score =  600 bits (310), Expect = e-176
 Identities = 382/422 (90%), Gaps = 29/422 (6%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggaattcctttctatacggttcctgtcactaattcatttatttctattaaggagtagtaa 66
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ggaattcctttcta-agggttcctgtcactaattcatttatttctattaaggagtagtaa 718

                                                                       
Query: 67  gtattctatggcatgga-ttttgcataccttgcaaaacagtttcc----------aactg 115
           ||||||||||||||||| |||||||||||||||  | | ||||||          |||||
Sbjct: 717 gtattctatggcatggatttttgcataccttgcttatctgtttccaagctgaaggaactg 658

                                                                       
Query: 116 ttt-------------ggggggggttcatataaagcatatatatataaaaaatatttctt 162
           |||             ||||||||||||||||||||    ||||||||||||||||||||
Sbjct: 657 tttgcggtggggggggggggggggttcatataaagc----atatataaaaaatatttctt 602

                                                                       
Query: 163 caaatgttatcgaaggctagctattgaaaaggatctcagtgttcatcaggggtgaggcct 222
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 caaatgttatcgaaggctagctattgaaaaggatctcagtgttcatcaggggtgaggcct 542

                                                                       
Query: 223 gcattaaataaattgtaatgcagcccataacacaatatgcagaaatgctggaaagaagac 282
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gcattaaatagactgtaatgcagcccataacacaatatgcagaaatgctggaaagaagac 482

                                                                       
Query: 283 gcacattcgttggaacaggagacacacacattctagcactctcgtgagtcatactccctg 342
           ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 481 gcacattcgttggaacaggagacacacacgttctagcactctcgtgagtcagactccctg 422

                                                                       
Query: 343 tgtctctgtttgcctgcctgcagagtgggagaactgaagcccgtcatggtggcacccact 402
           ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 421 tgtctctgtttgcctgcctgcagagtgggagcactgaagcctgtcatggtggcacccact 362

             
Query: 403 ta 404
           ||
Sbjct: 361 ta 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)