Query= MSMg01no419_e24.b1 MSMg01no419_e24.b1 CHROMAT_FILE:
MSMg01no419_e24.b1 PHD_FILE: MSMg01no419_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:48 2005
(359 letters)
>mm_chr5_86235854_86236612
Length = 759
Score = 648 bits (335), Expect = 0.0
Identities = 353/359 (98%)
Strand = Plus / Minus
Query: 1 tgtatcttgtgggaatacaagaaggttctttcttaatttcagaaaattctacaaataaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgtatcttgtgggaatacaagaaggttctttcttaatttcagaaaattctacaaataaac 500
Query: 61 aaaccacctgccaaaacgtgagattttgttttttttctaagagcaagcagggtaatgtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 499 aaaccacctgccaaaacgtgagattttgttttttttctaagagcaagcagggtaatgcta 440
Query: 121 tctcctgcagcagaacacaataacgaggggcttgataatacgcattattaacatgctcag 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 439 tctcctgcagcagaacacaataacgaggggcttgagaatacgcattattaacatgctcag 380
Query: 181 tgagctgcctcaaatcctatatggaggtagggatggtataaataagtaaacacattcctt 240
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 379 tgagctgcctcaaatcctatatggagggagggatggtataaataagtaagcacattcctt 320
Query: 241 ggatctttactgtctgaggtgtggtgagctgcttcagtcttggaagcacattaaaattgc 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggatctttactgtctgaggtttggtgagctgcttcagtcttggaagcacattaaaattgc 260
Query: 301 tgctatataattggatttgtttgctattagggtgtagctctccaacatctccccatgtt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 259 tgctatataattggatttgtttgctattagggtgtagctctccaacatctccctatgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space: 262500
Effective search space used: 262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_e24.g1 MSMg01no419_e24.g1 CHROMAT_FILE:
MSMg01no419_e24.g1 PHD_FILE: MSMg01no419_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:48 2005
(542 letters)
>mm_chr5_86079083_86080024
Length = 942
Score = 971 bits (502), Expect = 0.0
Identities = 531/546 (97%), Gaps = 10/546 (1%)
Strand = Plus / Plus
Query: 1 gctccctttcactttgtactttccttctttctttgtttacacgtcagaaaacatcagaga 60
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 201 gctccctttcactttgtactttccttctttctttgggtacaagtcagaaaacatcagaga 260
Query: 61 aaatatgataaaaacacactaaaccttgtgagccaaaagaataaatgtaattttaagaaa 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatatgagaaaaacacactaaaccttgtgagccaaaagaataaatgtaattttaagaaa 320
Query: 121 aactttttttaaaaggctgaaaagaaaactaatgagaaataccacctgttattctatctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactttttttaaaaggctgaaaagaaaactaatgagaaataccacctgttattctatctc 380
Query: 181 acagaataaacacacttgagattttattgtgtcttttctcagatagcatgacctacacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagaataaacacacttgagattttattgtgtcttttctcagatagcatgacctacacag 440
Query: 241 attttt-----agctgctgctttatcgtttaataatacacgtttttcttttctatgatgc 295
| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 a-----ggcaaagctgctgctttatcgtttaataatacacgtttttcttttctatgatgc 495
Query: 296 caaacaccatgggatgcattatctttaatgattgtccaatcgcccacaacaaaagaccaa 355
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 496 caaacaccatgggatgcattatctttaatgattgtccaatcgtccacaacaaaagaccaa 555
Query: 356 cgtacaactcattcaacaagaatcctgtgattatttcctatgttctgagcgccaaacact 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cgtacaactcattcaacaagaatcctgtgattatttcctatgttctgagcgccaaacact 615
Query: 416 taaaaatagaacaaaagagagacagaatttccactaatggtttccaatagtttaaaacaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 taaaaatagaacaaaagagagacagaatttccactaatggtttccaatagtttaaaacaa 675
Query: 476 caatctcttccattttcttcctgtagcaaaccacagagcaacaaatgtcattggacagaa 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 caatctcttccattttcttcctgtagcaaaccacagagcaacaaatgtcattggacagaa 735
Query: 536 agtttg 541
||||||
Sbjct: 736 agtttg 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
