BAC Information

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BAC

Clone NameMSMg01-419F19
Chromosome5 (Build37)
Map Location 87,644,024 - 87,644,380
singlet/doubletsinglet
Overlap genenone
Upstream geneTmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848
Downstream geneUgt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419F19.T7 (MSMg01no419_f19.b1)MSMg01-419F19.TJ (MSMg01no419_f19.g1)
ACCAG514481AG514482
length770763
length of high quality
(start - end)		353 (90 - 442)455 (65 - 519)
definitionCHROMAT_FILE: MSMg01no419_f19.b1 PHD_FILE: MSMg01no419_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:52 2005CHROMAT_FILE: MSMg01no419_f19.g1 PHD_FILE: MSMg01no419_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:52 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNNNTTTTTCTCAAATTTTGGGGCGCGGAAGGAGACCTATTCCTTACAA
GAATCGCGGAATTCCTGGTTTTCGAATAGCACATGTACAAAATCTGTGCA
ACATGGAAACAAACCAAATCTGAGCATGGAGAGAGGAGAGGGGCACTTGG
TCCACACCACACAGAGCCTTGGACTCTTGACATCTGTTCACTTATAGGAG
GAGAAGGGTGCAGCTCCTGCGAAGTCAACTACTATCTACTGAAGGACCGC
ATACACAAGAATATTTGGAATGTGCAAATCAGTCTTGAAGTTGTTGGGTT
TCTTTCTCTTTTTTTGAAGGGTACTTAGTTGGGTTGGTAAGGAAGATGAT
GATTTACAGATTATGGTAAGAAGGAATGAATTTTAAGAAGCACGTTATAT
GAAATTCTAAAGAAAAATGAANAAACCAAGAGAAATAGAAATATCAGTTT
CTCTTGGTGTGATCACAGTCATCATTGGAACAGCAAGTTGAATCCCAGGN
AAGGGGTGATGCCTGGCTGTTCTGGACCATTATCCCCCACAAAACTCCAC
AAAAGGTGGGGGGCCCTTAAGGTGGATGGGGCAAACCCGGTTAAAATTTG
CTTTTAATCCACCCTGGCCCCCCCCCCCAGGAATTGGAATTATAGCCCCA
ACTTTTCCCCCTTTCTCTTTCATTCATTAAATTCCCCTCGTTTTGTAAAA
AATTTTCCTGGAGAAGTTTTTTTTTTTTTCACCCAAATATTTCTCTCTCC
TTTCCCCGTTTTCGCCGTTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACGCCCAGTCACTGCTCATCTCAGGGCTTAGTATTG
AGGTGATGGTCGAGCAACTAATCAGGTGCTGTAACTCCACATCAGGTGCT
GAAACGTCACGCTGAGGGCTATATAAGCAGCACCATTTTCCGGGTTTGGG
GTCTTCCTTATGTTGAAGCAATAAAAGCTTTGCTGTAGAAGGATCCAGTT
GTCCGAGTGAATTGTTGCTGGAGAGATACTAGCTTGGGCAAGAAGTGGCA
CAGAAACCCGGGATTTATCATCATCAGGCGCTGATAGGAGACCCCCCCCC
ACCCCCCGTTTCACGGGGCGGGTTCAGAACTAAGGGTAACTTTACAGCTC
TGCAAGGTACACTCGGTCTTGAACTTTCTCCAACGTTAGAAGCCTTTCTG
TTCCTTTTCACAGGGCTCGTTCTTTTTCTTTTGATTGCATACTGTTTCCA
CTGGTAGAATTGCTAACTGGTGTTCAGTGGAGGTCAGGCATGGTTAGAAA
AAAAACAAGAAGATAAGCTGGGGGCCTGCCACTCTGTGGTGACGCCTTAG
GGCCGTCCCGAGGGAACCCGCTTTGAAATCCCCCCCCACAAATTATAAAG
TTTTGTTAAAAAGAAAACCCAAACCCCCCGGTTTGGTGGCCAGGTCCTTT
ATATACCCCCCTGGGGAAAATTCAGGTAAATACTTCCGGACCCTGGAAGG
GTGCTTTTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_f19.b1 MSMg01no419_f19.b1 CHROMAT_FILE:
MSMg01no419_f19.b1 PHD_FILE: MSMg01no419_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:52 2005
         (353 letters)



>mm_chr5_87643634_87644388
          Length = 755

 Score =  246 bits (127), Expect = 2e-69
 Identities = 297/372 (79%), Gaps = 42/372 (11%)
 Strand = Plus / Minus

                                                                       
Query: 4   tctgtgcaacatggaaacaaaccaaatctgagcatggagagaggagaggggcacttggtc 63
           ||||||||| ||  ||||| | ||||||||||||||||||||| ||||||| |||     
Sbjct: 747 tctgtgcaatat--aaacagagcaaatctgagcatggagagagtagaggggtact----- 695

                                                                       
Query: 64  caca--ccacacagagccttggactcttgacatctgttcacttatagga-ggagaagggt 120
             ||  |  ||||||||| | ||||||||||| |||||  ||| || || || |||| ||
Sbjct: 694 --cagtctgcacagagccatagactcttgacacctgttggcttgtaagatgg-gaagagt 638

                                                                       
Query: 121 gcagctcctgcgaagtcaactactatctactgaaggaccgcatacacaagaatatttgga 180
           ||||   ||| | || || | ||||||||||||| |||| |||||||||||||| |||||
Sbjct: 637 gcagaaactggggagccagccactatctactgaaagaccacatacacaagaatacttgga 578

                                                                       
Query: 181 atgtgc-aaatcagtcttgaagttgttgggtttctttc--------------tc-ttttt 224
           |||||| |||| ||||||||| ||| ||||||||||||              || |||||
Sbjct: 577 atgtgcaaaat-agtcttgaaattgctgggtttctttctttctttctttctttctttttt 519

                                                                       
Query: 225 ttgaagggtacttagttgggttggtaaggaag--atgatgatttac---agattatggta 279
           ||||||||||||||||||||||||||||||||  |  |||||||||   |||||||||||
Sbjct: 518 ttgaagggtacttagttgggttggtaaggaaggca--atgatttacagaagattatggta 461

                                                                       
Query: 280 agaaggaatgaattttaagaagcacgttatatgaaattctaaagaaaaatg-aanaa--a 336
           ||||||||||||||||| |||||| |||||| ||||||||||||| ||||| || ||  |
Sbjct: 460 agaaggaatgaattttaggaagcatgttataggaaattctaaagagaaatgtaaaaataa 401

                       
Query: 337 ccaagagaaata 348
             ||||||||||
Sbjct: 400 --aagagaaata 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 755
Length adjustment: 9
Effective length of query: 344
Effective length of database: 746
Effective search space:   256624
Effective search space used:   256624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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