NNTTATCTATAATTGTGGGGCTATAAGAGTCCCTATTTCCTCAGAGCGCG
GGAAATCCATCTTTCACAGATTACATCTAGAGAAAAAAGAAACTGTGATG
AGAAAGATACTAGCTATATTTATACCTGTGTGTGAGGTTTTATAAGATGT
GTTTTTAAAGTGTCTTAAAAAGTGTATACTTTAAAAATATAAATATAGAG
ACTTTTCTCCTCGAGATTTTGATTTCTCTATTTATAGGTGATGGGTTATG
TTTACGGAACCAGGCCTGAGTTCCCTACTGTTTAGTGAGGCCATAAATCC
AATTAGATAGCTTGTTACTTTTTTATAAATGTGCCTCTCTTCACCATTGT
AGATACCTTCTTAGTCAAGTCATTGTGTAGTGCCATCCACTTATATATAA
CTGATATAATAATGTTTATTAATGTGGAAGGACCCAGATAACTAAGTAGG
TGCCATCCCTGTACTGGTGGTCCTGGGTACAATGAGAAAGCAAGGGTATC
TATGTCCCCTTTGGCATATTTTTCTTGTACTTGTTCAACTCATGCTTAAT
CAGATTTTTNGTTTTGCATTTGGTTTTTGTTTTTGATGGCACATATAACT
TAGTAGCTGAAATTCCCACGGAGATAAAATCAAAAAACAAAGTCCTTGAT
TCCTTTTGTCTTTGAGACAAGATTCCACCAAGATATCAAAGTTGAGGATT
TAACGGTTTTAAAAAACACAATTTTTAAAGTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTCTCAGAAGGACAAATAGTATTTATAAGTG
CTAGATGTTAGATACATAATAAGATATAAGTGTTGATGATTTGATAATAC
AAGCAAAATGTTCCTGTTTCTTGAAAATAGAGAAACAATTTGAGTTAATA
GACTGAAGGGAAATAGATAGTCTTGAATAGTAACCATTCTAATATCCAAT
CTCGGTGGCGTGTCTATAAACTTTAAGTATCACTTCATGATGTTCTGGTG
TATCCCTCATTAGACATATGGTGCTTGATATTTCAGATAATAAGGGATTT
ATTTAACAAATAACTCAAATATAAATTTCTGCTTTTACTGTCAAAATGAT
TTTAGGAACACAGTTAAAGAGGTAGCTCAACTTTGAAGAGTGTTTTGTTG
AGAACAGGTGTTCAGTTCTCAGTGCCTGCATTGTGCGACTCACAACTGCC
CTTAGTTCCAGTTCCAGGGCATTTGATAACTTTATGGCATCTGCAGACAC
TTGAATTCATGTGCATACACCCCTGAATAGATGCACACATAAACATAAGG
TCCAAAATAAAATAATTTTTAAAAGATTTTTTATAAGATTTACTTTTCCT
GAGTTTTGTAGAANAAATTATGTGTATAAACTGGGAGTTACTGAGTGAGG
TAACCCATCACAAAAGAACTCACATGATATGCACTCACTGATA

Query= MSMg01no420_a20.g1 MSMg01no420_a20.g1 CHROMAT_FILE:
MSMg01no420_a20.g1 PHD_FILE: MSMg01no420_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:46 2005
         (557 letters)



>mm_chr5_85872078_85873034
          Length = 957

 Score = 1006 bits (520), Expect = 0.0
 Identities = 538/544 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctcagaaggacaaatagtatttataagtgctagatgttagatacataataagatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 actctcagaaggacaaatagtatttataagtgctagatgttagatacataataagatata 485

                                                                       
Query: 61  agtgttgatgatttgataatacaagcaaaatgttcctgtttcttgaaaatagagaaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agtgttgatgatttgataatacaagcaaaatgttcctgtttcttgaaaatagagaaacaa 425

                                                                       
Query: 121 tttgagttaatagactgaagggaaatagatagtcttgaatagtaaccattctaatatcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tttgagttaatagactgaagggaaatagatagtcttgaatagtaaccattctaatatcca 365

                                                                       
Query: 181 atctcggtggcgtgtctataaactttaagtatcacttcatgatgttctggtgtatccctc 240
           |||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 364 atctcggtggtgtgtctataaacagtaagtatcacttcatgatgttctggtgtatccctc 305

                                                                       
Query: 241 attagacatatggtgcttgatatttcagataataagggatttatttaacaaataactcaa 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 attagacaaatggtgcttgatatttcagataataagggatttatttaacaaataactcaa 245

                                                                       
Query: 301 atataaatttctgcttttactgtcaaaatgattttaggaacacagttaaagaggtagctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 atataaatttctgcttttactgtcaaaatgattttaggaacacagttaaagaggtagctc 185

                                                                       
Query: 361 aactttgaagagtgttttgttgagaacaggtgttcagttctcagtgcctgcattgtgcga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aactttgaagagtgttttgttgagaacaggtgttcagttctcagtgcctgcattgtgcga 125

                                                                       
Query: 421 ctcacaactgcccttagttccagttccagggcatttgataactttatggcatctgcagac 480
           |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ctcagaactgcctttagttccagttccagggcatttgataactttatggcatctgcagac 65

                                                                       
Query: 481 acttgaattcatgtgcatacacccctgaatagatgcacacataaacataaggtccaaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  acttgaattcatgtgcatacacccctgaatagatgcacacataaacataaggtccaaaat 5

               
Query: 541 aaaa 544
           ||||
Sbjct: 4   aaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)