BAC Information

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BAC

Clone NameMSMg01-420K12
Chromosome5 (Build37)
Map Location 148,978,755 - 148,979,078
singlet/doubletsinglet
Overlap geneC130038G02Rik
Upstream geneGsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1, LOC100039825, Pomp, Slc46a3
Downstream geneLOC100041819, Slc7a1, LOC100041842, Ubl3, 2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420K12.T7 (MSMg01no420_k12.b1)MSMg01-420K12.TJ (MSMg01no420_k12.g1)
ACCAG515471AG515472
length723741
length of high quality
(start - end)
---324 (319 - 642)
definitionCHROMAT_FILE: MSMg01no420_k12.b1 PHD_FILE: MSMg01no420_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:34 2005CHROMAT_FILE: MSMg01no420_k12.g1 PHD_FILE: MSMg01no420_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCATCATAAGTGGGGGGGAGAGAANGANNACTTTTTCGGACCCGCCGG
AGGANNNNNTCTGCTGACCGAACGGGAGGAGGAGGNGGNNNGCGGAGANC
AACNAGCGAGGAGGACCTTTTAAAGACCGCCGAGAAACGAACNNNCNNCC
GCNCCAGNGGGCCCACCCGCCGGGGAAGCCCCCCCCAGGGAANACCAGCC
GAAAAAAACACCNCCGCAGGGCGAAGAGCGGGGGGAAGGGGCGGGAAANC
ATTTTTTGGAAAAAAACTTCTCGTTGGGACAACCCCTCCCGCCGGATTAC
CGCTGAAAGGACGTGTTTTATANTTTCCAGAAAGAGCCGGCCCAACCCAA
ACAGATGATTTCCCGCCCGCAGGAAAAAGAGGGCTCCTAATACTAAAAAA
AAATGGAGGGCAAAACTACCCTGGGGAGGCATTTTCCACCTTACCGCCGA
AAGACCGGGCTGAACCCCCCTATAAGGGGAAGAGACGAATTAAGTTGAGT
AGCCGTACCCGCCGGGACTCCGGTCTCCCCGCTGAACAGTGTCGAATTGA
CGCAGCTGAGACCTTCCTAAGAGGCTGCTTTACGGGAACCTTTACCACCG
AGACCCGGCACTTGTGGATGCGGAGAGAAGGAAATTTCCCCGGGGCGTTT
CTTTTTTTTTCTGCGCAACTGTACTACCGCGAAGTTGTTTCCCTGGCGGG
GTTTTTCACCCCCCACTGTTGAG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTGTAATTTCCTTGGCTCACAAAATCAACATCAG
AATGTTTTTGCCAGCCTAGGAAGGGCTTGAGGAATTCTGACTGCTTTCCT
GCTCGGGAATTATTGTTAAGCTCTCATGTGCAGACTGAAGGAATCCCTTC
TGGTAAGAATGGGGTTAATGTGTTCCATACTCATGAAACCATCCTTGAGA
GAAACCACCACCTCTCTTTAGTAAATACCAGGTGTTAATTGTTTCATGAT
TTGAACTATTCGATCAATGCCAATCAACCTGGAATTGATCCATGATTTAG
AGTCAGGCATGCATATACAAACATGCCATGCTAAATTTCAGCTCATGTTG
GCTGGAATATGTTCTGTTGAGGTGGGATTGGCCTATGTGTCTCATTGTCC
CCATGCAGCATGACCTTAAAATGCTCATGGACAGTATCATCTTCTTTAGG
TGGACTTCCACGTTTCCACTCACGTTTAGCTTCAACCCAACAAGAAATGT
TTATATCAGGGAGCATAGGAAGGTGGGTAGTGCGCTTGCCCAGCAGATAT
GGAGCTCTGAGAGTTATCTCCAACATGGAGAAATAATGTTTAAAGATACT
TTAGAGTAAGTCCATATTCCCTGGGGAACAGTAAGTGAGCTTTTGTCCAA
CAGTGTTATGAAATTCATGAGCTAAACTTCGAAGTGGCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_k12.g1 MSMg01no420_k12.g1 CHROMAT_FILE:
MSMg01no420_k12.g1 PHD_FILE: MSMg01no420_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:34 2005
         (324 letters)



>mm_chr5_148978555_148979280
          Length = 726

 Score =  516 bits (267), Expect = e-151
 Identities = 310/325 (95%), Gaps = 4/325 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccaatcaacctggaattgatccatga-tttagagtcaggcatgcatatacaaacatgcc 59
           |||||||| |||||| ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 201 gccaatcagcctggagttgatccat-actttagagtcaggcatgcatatacaaacatgcc 259

                                                                       
Query: 60  atgctaaatttcagctcatgttggctggaatatgttctgttgaggtgggattggcctatg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atgctaaatttcagctcatgttggctggaatatgttctgttgaggtgggattggcctatg 319

                                                                       
Query: 120 tgtctcattgtccccatgcagcatgaccttaaaatg--ctcatggacagtatcatcttct 177
           |||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||
Sbjct: 320 tgtctcattgtccccatgcagcgtgaccttaaaatgtgctcatggacagtatcatcttct 379

                                                                       
Query: 178 ttaggtggacttccacgtttccactcacgtttagcttcaacccaacaagaaatgtttata 237
           ||||||| |||||||| |||||| |||| ||||||||||||||||||||||| |||||| 
Sbjct: 380 ttaggtgaacttccacatttccattcacttttagcttcaacccaacaagaaacgtttatg 439

                                                                       
Query: 238 tcagggagcataggaaggtgggtagtgcgcttgcccagcagatatggagctctgagagtt 297
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 440 tcagggagcataggaaggtgggtaatgcgcttgcccagcagatatggagctctgggagtt 499

                                    
Query: 298 atctccaacatggagaaataatgtt 322
           |||||||||||||||||||||||||
Sbjct: 500 atctccaacatggagaaataatgtt 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 726
Length adjustment: 9
Effective length of query: 315
Effective length of database: 717
Effective search space:   225855
Effective search space used:   225855
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)